June 30, 2010
By now most SV-POW! readers will have heard of Leviathan melvillei, the big-toothed Miocene sperm whale that was named in Nature today (Lambert et al. 2010) — if not, see for example the Discover Magazine blog article for the basics.
My first thought was “Wow, that is one awesome animal.”
My second was, “I can’t believe no-one’s used the genus name Leviathan before”.
But it’s really not clear what’s being said here: the relevant page from the printed edition says “Levathan Koch , Descr. of Missourium, 1840, 13 (as Leviathan p. 14). — Mamm”. The use of italics suggests that the NZ editors considered the name as nomenclaturally valid, but the relation between the names Levathan [sic] and Leviathan is not clear.
Looking around a bit more, I found Lindsay (1991) which happens to discuss the specimen in question, and at least some of the publications. The first page of this article is freely available and says:
The mastodon’s remains had been discovered by Albert Koch in 1840 on the Pomme de Terre River in Benton or Hickory County in Missouri, and possibly parts were from Jefferson County as well. A skeleton was assembled later that year in Koch’s St. Louis museum and went on display as the Missourium or Missouri Leviathan. Koch also referred to the specimen as Levathan [sic] Missourii (1841) and Leviathan Missouriensis (1843), by which time he had also given it the name Missourium Theristocaulodon on account of “its enormous sickle shaped tusks”.
[Update, 1st July. It's now apparent that Lindsay (1991) overlooked a passage in the 1841 first edition of Koch's pamphlet in which he established the name Leviathan two years before the 5th edition in which its name was included in the expanded title. Thanks to Christopher Taylor for pointing this out.]
The first thing to note is of course that Koch was a truly horrible taxonomist. He proposed three distinct genus names for a single specimen in a space of three years, and as in fact became apparent subsequently, they are all junior synonyms of Mammut, the mastodon. The second thing to note is that he was a truly horrible palaeobiologist, concluding for spurious reasons that his specimen was an aquatic animal (hence his use of the name of the biblical sea-monster).
I don’t know whether Lindsay addressed this question, as I only have the first page of his article (and if anyone who has access can send me the whole thing I’ll be grateful). But now that I knew to search for the relevant date, 1843, I was able to find Montagu and Peterson (1944), which contains the answer:
Sometime during 1843 Koch took his collections to Ireland where they, together with the Missourium, were exhibited at Dublin. Here appeared the “Fifth edition, enlarged,” of his pamphlet together with a new title-page and a completely rewritten and revised text .
And note 25 is the full reference:
Description of the Missourium Theristocaulodon (Koch) or Missouri Leviathan (Leviathan Missouriensis,) together with its supposed habits, and the Indian Traditions: also, comparison on the Whale, Crcocodile, and Missourium, with the Leviathan, as described in the 41st Chapter of the Book of Job; by Albert Koch. Printed by C. Crookes, 87 Chapel Street, Dublin: 28 pp., 8°, 1843.
It seems apparent from the typography here — with the words “Leviathan Missouriensis” being the only words of the title set in italics — that Koch was indeed publishing this as a scientific name.
Just to reiterate: if the name was validly published according to the tenets of the ICZN, then the genus name Leviathan Koch 1843 is nomenclaturally valid even though taxonomically it’s junk, being a junior objective synonym of Levathan Koch 1841 and a junior subjective synonym of Mammut Blumenbach 1799. And if it’s nomenclaturally valid, then that name is preoccupied, and Lambert et al. will need to propose a replacement name for their awesome whale.
All of this is based on glimpses of single pages and suchlike of the various relevant papers: I don’t have the full text of Lindsay (1991) or Montagu and Peterson (1944), and I have never clapped eyes on the crucial Koch (1843) at all. So it’s perfectly possible that I’ve overlooked something, and the genus Leviathan Koch 1843 was not validly published. This should definitely by confirmed or denied by someone who has a copy of that publication.
But at the moment, things aren’t looking good for Leviathan Lambert et al. 2010.
- Koch, Albert. 1843. Description of the Missourium Theristocaulodon (Koch) or Missouri Leviathan (Leviathan Missouriensis,) together with its supposed habits, and the Indian Traditions: also, comparison on the Whale, Crcocodile, and Missourium, with the Leviathan, as described in the 41st Chapter of the Book of Job. C. Crookes, Dublin. 28 pages.
- Lambert, Olivier, Giovanni Bianucci, Klaas Post, Christian de Muizon, Rodolfo Salas-Gismondi, Mario Urbina and Jelle Reumer. 2010. The giant bite of a new raptorial sperm whale from the Miocene epoch of Peru. Nature 466:105-108. doi:10.1038/nature09067
- Lindsay, William. 1991. ”Mammoth” Task. Curator: The Museum Journal 34(4):261-272.
- Montagu, M. F. Ashley, and C. Bernard Peterson. 1944. The Earliest Account of the Association of Human Artifacts with Fossil Mammals in North America. Proceedings of the American Philosophical Society 87(5):407-419.
A comment by Charles Epting on the recent article about self-publication led me to check the relevant section of the draft Phylocode, which I’ve read once or twice before but not recently enough for this to have hit me with the force it ought:
From Chapter II. Publication, and specifically Article 4. Publication Requirements:
4.2. Publication, under this code, is defined as distribution of text (but not sound), with or without images. To qualify as published, works must be peer-reviewed, consist of numerous (at least 50 copies), simultaneously obtainable, identical, durable, and unalterable copies, some of which are distributed to major institutional libraries (in at least five countries on three continents) so that the work is generally accessible as a permanent public record to the scientific community, be it through sale or exchange or gift, and subject to the restrictions and qualifications in the present article.
4.3. The following do not qualify as publication: (a) dissemination of text or images solely through electronic communication networks (such as the Internet) or through storage media (such as CDs, diskettes, film, microfilm and microfiche) that require a special device to read.
I am … flabbergasted, if that’s the word I want. (I always want to spell that with an “h” after the “g”.) This language is obviously derived from what’s in the ICZN — for example, “must have been produced in an edition containing simultaneously obtainable copies by a method that assures numerous identical and durable copies” becomes “must consist of numerous (at least 50 copies), simultaneously obtainable, identical, durable, and unalterable copies”.
And the result is that, just like the ICZN, the draft Phylocode does not recognise electronic publication.
Just think about that. It means that if you define a clade in most of the PLoS journals, it won’t count (unless the journal does one of its inkjet-and-staples special print runs for you). It also means that any clades you define in Proceedings of the Royal Society of London will not count when the initial online article is published, but only when the later printed edition comes out. In other words, it means that both the science journals that are growing most quickly in influence and prestige and the oldest science journal in the world will both be useless for phylogenetic nomenclature.
I am sure that’s not what the Phylocode authors want.
That’s particularly true in light of the code’s further requirement that in order to be valid, clade definitions need to be registered. Really, once a name is officially registered in the Phylocode database and its definition is in a paper published by a reputable publisher and existing in thousands of bit-for-bit-identicial copies in every country in the world, what else is needed for stability? Fifty stapled inkjet copies?
It seems particularly startling in light of the fact that even the notoriously slow-moving ICZN seems now to be recognising that electronic publishing is inevitable; it would be pretty horrible if by the time the Phylocode is finally implemented, the ICZN has accepted its electronic publishing amendment and the Phylocode is seen to be trailing behind the ICZN in recognising the reality of the world we live in. (For anyone who is not yet convinced of that reality, I recommend *cough* Taylor 2009, which is a pleasantly easy read.)
Is it too late? Can the Phylocode be fixed before it’s implemented? Can it just be done, or will it need lengthy discussion first? If this doesn’t get fixed, will anyone take the Phylocode seriously? Is there even a serious argument for keeping the Article 4.2 language as it is now?
I don’t know the answers to any of these questions. Does anyone else out there?
In other news …
I am astounded at the lack of response to University of California vs. Nature, which seems to me just about the most significant thing that’s happened in the world of academic literature since, well, forever. Can it really be that everyone else’s response is, and I quote, “meh”?
- Curry Rogers, K. 2009. The postcranial osteology of Rapetosaurus krausei (Sauropoda: Titanosauria) from the Late Cretaceous of Madagascar. Journal of Vertebrate Paleontology 29(4):1046-1086.
- Taylor, Michael P. 2009. Electronic publication of nomenclatural acts is inevitable, and will be accepted by the taxonomic community with or without the endorsement of the Code. Bulletin of Zoological Nomenclature 66(3):205-214.
The big noise on the Dinosaur Mailing List at the moment is this thread about Rob Gay’s newly self-published book Notes on Early Mesozoic Theropods, which you can buy from print-on-demand house lulu.com. (You can also pay to download a PDF if you prefer.)
The interesting thing about about this book is that it contains nomenclatural acts — specifically it names the new theropod Kayentavenator elysiae. But is this act valid according to the ICZN? Opinions differ. The fact that the work was self-published is irrelevant — the Code simply doesn’t care about that. Beyond this, in the book itself, Gay contends that:
Those that are concerned about the naming of a new genus in this format should not be. The availability and distribution requirements are more than met—the relevant institutions have received a copy for their records. In addition “Notes on Early Mesozoic Theropods” will remain available to all who wish to purchase it online, as well as those stores that chose to carry it, for the foreseeable future—far surpassing the availability of many other high profile publications to those anywhere on the globe.
He feels that this satisfies the relevant articles of the code:
8.1. Criteria to be met. A work must satisfy the following criteria:
- 8.1.1. it must be issued for the purpose of providing a public and permanent scientific record,
- 8.1.2. it must be obtainable, when first issued, free of charge or by purchase, and
- 8.1.3. it must have been produced in an edition containing simultaneously obtainable copies by a method that assures numerous identical and durable copies.
The first thing to say is that Gay would have done himself a favour if his preface had discussed these articles specifically and explained how he felt they were fulfilled: by making only the more general statement above, he’s left matters more open to discussion; or at least forfeited the opportunity to get in a good, strong, opening statement in the inevitable debate.
My own feeling, based on a couple of years on the ICZN mailing list and having witnessed many such discussions between the Commissioners and other specialist nomenclaturists, is that a print-on-demand publication like this does not meet requirement 8.1.3 (“simultaneously obtainable copies by a method that assures numerous identical and durable copies”) — it’s because of this requirement that PLoS ONE has had to adopt its frankly rather silly policy of printing 50 hardcopies of each article it publishes that contains nomenclatural acts, rather than just printing copies on demand for anyone who wants them.
[There has also been some talk on the list about whether this book counts as published under Article 8.6, "Works produced after 1999 by a method that does not employ printing on paper", but there's no room for debate about that. That Article states that such a work "must contain a statement that copies (in the form in which it is published) have been deposited in at least 5 major publicly accessible libraries which are identified by name in the work itself", which is not the case for this book.]
But the real question is: so what? The Commission will never produce a ruling on this — it just doesn’t do that, unless presented with a formal petition to conserve a subsequently published name for the same taxon. So in practice, whatever the code says, the reality is that the validity of the name Kayentavenator elysiae will — like the validity of all other names — be determined by whether and how it actually gets used in subsequent work.
In short, it comes down to this: when the next paper comes out on that animal, will it use Gay’s name, or will the worker in question erect his own name for the same animal and claim that it has priority as the first validly published name?
And that in turn comes down to — let’s be frank — the personality of that next worker. We all know of scientists whose goal seems to be to get their name on as many publications and taxa as possible; we all know others who are more concerned with giving credit where it’s due. It seems strange that something like the effective validity of a zoological name should be determined by a personality, but that’s how it looks.
As a side-issue, the way I read this is that Gay has done himself a huge disfavour by charging a fee to download the PDF version of his book. If he wants his work to be accepted, then the best way is to make sure anyone who is remotely interested can get get hold of it with minimal inconvenience and at zero cost. It may seem odd, but the truth is that Kayentavenator elysiae‘s chances of survival are dependent far more on marketing than on any other factor; so the PDFs should be made freely and easily available.
The sky is falling! The sky is falling!
Tim Williams was one of several commenters on the DML to make this point:
This is a HUGE concern. Especially because advances in technology mean that self-publication is now much cheaper than it used to be. All you need is a computer and a printer, and off you go.
This has been true for some time. If anything, it’s surprising that we don’t see a lot more rogue taxonomy than we do, especially in a field as charismatic as dinosaur palaeontology. For some reason, extant animals seem (so far) to have suffered much more from this than we have — see for example Raymond Hoser, whose self-published taxonomic works have been widely referred to as “taxonomic vandalism” and whose name has been used in the term “Hoser taxonomy”.
I think we’re deluding ourselves if we think this isn’t coming to dinosaur palaeo.
The widely expressed fear is that “anyone, regardless of knowledge and abilities, will be able to create valid taxa without any restraints” (Dan Chure to the DML). Because “when it comes to what constitutes a published work, Article 8 of the ICZN Code is so vague and permissive that it is laughably easy to meet the criteria” (Tim Williams again).
Unfortunately, it’s not a simple matter of tightening the language up. Even if the ICZN didn’t move so agonisingly slowly, it’s not really possible to give a rigorous definition of “valid publication”. You could come up with whatever form of words you wanted, and I (if I were sufficiently unethical) could find a way to make an end-run around it.
In particular, requiring peer-review (while a step in the right direction) would not solve the problem: then you have to define what “peer-review” means, and as we’ve seen in certain articles published in in-house journals in recent years, that concept is also slippery.
Here’s where I think this is going. Ultimately, the validity or otherwise of names is always decided by the working taxonomic (and more broadly biological) community. Until recently, the broader community has been able to delegate the process to journals in most cases, because it was easy to see what a “journal” was: it had a publisher, it was printed on glossy paper, and it came out on a regular schedule. It was easy to see whether a given work was in a journal or not.
That is changing very fast. By most of the criteria above, PLoS ONE is not a “journal” (no publisher but itself, no printing on paper, and no regular schedule) yet I don’t think anyone is going to claim it’s not a journal. Although I think PLoS ONE is a wonderful thing (I’ll be sending my own work there), one of its deleterious side-effects is that it, along with Palaeontologia Electronica and others, has shifted people’s ideas of what is “published”. One can easily imagine, say, a museum setting up its own PLoS-like journal — maybe a reputable one, maybe a less reputable one. From there it’s a short slide to a department, a small group or even an individual setting up his own journal. We have to face the facts that (A) it’s going to be hard to say what is and isn’t a “journal” and (B) we have no way of checking, in general, that “peer-review” is meaningful and adequate.
So I see only two possible paths.
One is that names will get published here, there and everywhere — ultimately even on blogs (although we don’t plan to go down that path here on SV-POW!) — and it will be up to the community to determine what is and isn’t counted as valid.
The other possibility is that a formal name-registration database like ZooBank comes swinging in to save the day, and only registered names are considered valid (or only registered names and those published before, say, 2012).
Unfortunately, ZooBank seems to be the only candidate registration system in town, and it’s in trouble: grotesquely underfunded, the work of basically one person, consequently well behind schedule and by no means ready technically or organisationally to do what it’s intended to do. (I mean no criticism of any individual in saying this, but those are the facts.)
The way forward?
It seems that nomenclatural anarchy is inevitable unless something like ZooBank takes off rapidly. So if I were rich and influential, one of the main things I’d be doing would be to pour that money and influence into ZooBank, getting it up to speed as soon as possible and making sure the infrastructure is in place to handle a lot of regsitrations really quickly. Because the current de facto approach of delegating the assessment of legitimacy to journals is on the way out: I give it less than ten years.
But given that science is chronically underfunded, and zoology funded less than most sciences, and zoological nomenclature less than most of the rest of the zoology, I am not optimistic than this can be made to fly. the bottom line for ZooBank is that it’s not anyone’s full-time or primary job; and until it is, there’s always going to be something else more urgent that pushes out this work that is merely important. (Actually it’s urgent, too, but because the deadlines are soft rather than hard, the urgency isn’t apparent — we’ll just all wake up one day and find that they’ve passed.)
I’m not happy about it, but my prediction is: nomenclatural anarchy. For sure, names published in JVP will start out with a better chance than names published in print-on-demand books at lulu.com, but that’s going to become a sliding scale rather than the clear black-and-white distinction we’ve been used to.
How bad is it?
I don’t know. The truth is that lots of nomenclatural decisions are made by the community already, and somehow we all seem to survive. I recently demonstrated, I thought conclusively, that the species formerly known as “Brachiosaurus” brancai cannot be considered congeneric with the Brachiosaurus type species B. altithorax, and must be considered to belong to its own genus Giraffatitan (Taylor 2009); but whether that reassignment is adopted is for the community to decide over the next few years. I was disappointed to see that Chure et al. (2010), for poorly explained reasons, rejected this name; and I was pleased to see that Sander et al. (2010) accepted it. But only time will tell whether it sticks. And yet, somehow, we survive despite all this uncertainty.
Will it be so terrible if, in the same way, the published works of the community determine which nomenclatural acts are considered validly published? Maybe not.
- Chure, Daniel, Brooks B. Britt, John A. Whitlock and Jeffrey A. Wilson. 2010. First complete sauropod dinosaur skull from the Cretaceous of the Americas and the evolution of sauropod dentition. Naturwissenschaften (online preprint). doi:10.1007/s00114-010-0650-6
- Curry Rogers, K. 2009. The postcranial osteology of Rapetosaurus krausei (Sauropoda: Titanosauria) from the Late Cretaceous of Madagascar. Journal of Vertebrate Paleontology 29(4):1046-1086.
- Sander, P. Martin, Andreas Christian, Marcus Clauss, Regina Fechner, Carole T. Gee, Eva-Maria Griebeler, Hanns-Christian Gunga, Jürgen Hummel, Heinrich Mallison, Steven F. Perry, Holger Preuschoft, Oliver W. M. Rauhut, Kristian Remes, Thomas Tütken, Oliver Wings and Ulrich Witzel. 2010. Biology of the sauropod dinosaurs: the evolution of gigantism. Biological Reviews. 43 pages. doi: 10.1111/j.1469-185X.2010.00137.x
- Taylor, Michael P. 2009a. A re-evaluation of Brachiosaurus altithorax Riggs 1903 (Dinosauria, Sauropoda) and its generic separation from Giraffatitan brancai (Janensch 1914). Journal of Vertebrate Paleontology 29(3):787-806.
After a completely barren 2008, this year is turning out to be a good one for me in terms of publications. Today sees the publication of Taylor (2009b), entitled Electronic publication of nomenclatural acts is inevitable, and will be accepted by the taxonomic community with or without the endorsement of the code — one of those papers where, if you’ve read the title, you can skip the rest of the paper. (Although on that score, my effort is knocked into a cocked hat by Hulke 1880.)
The message of the paper will be familiar to anyone who’s been following the Shiny Digital Future thread on this site; as indeed will parts of the text, as the paper is basically a more carefully worked and cohesive form of an argument that I’d previously spread across half a dozen blog posts, a similar number of emails on the ICZN mailing list and any number of comments on other people’s blogs. The sequence of section headings in the paper tells its own story:
And that conclusion reads as follows:
While we were looking the other way, the digital revolution has happened: everyone but the ICZN now accepts electronic publication. The Code is aﬀorded legitimacy by workers and journals only because it serves them; if we allow it to become anachronistic then they will desert it – or, at best, pick and choose, following only those provisions of the Code that suit them. Facing this reality, the Code has no realistic option but to change – to recognise electronic publishing as valid.
I have no detailed recommendations to make regarding the recently proposed amendments to the Code (ICZN, 2008). Instead I ask only this simple question: will the Code step up to the plate and regulate electronic publications as well as printed publications? Because this is the only question that remains open. Simply rejecting electronic publication is no longer a valid option.
Which I’m sure is familiar rhetoric to long-time SDF advocates, but which I hope will rattle a few cages in the more conservative ranks of specialist taxonomists. I think it’s a very promising sign that BZN, the official journal of the ICZN, is prepared to publish this kind of advocacy — they didn’t even ask me to tone down the language. I hope it indicates that in high places, they are sensing which way the wind is blowing.
Here’s a reminder of why electronic publishing is so desirable: figure 3 from Sereno et al.’s (2007) paper on the bizarre skull of the rebbachisaurid Nigersaurus:
Let me remind you that this was a paper about skulls — vertebrae were not even on the agenda. Yet click through the image (go on, you have to) and you will see them each presented in glorious high-resolution detail. That paper was of course published in the PLoS ONE — a journal that, because it is online only, can provide this quality of figure reproduction, which shames even the very best of printed journals. To see printed-on-paper figures this detailed and informative, you have to right back to Osborn and Mook (1921).
Which is why I recently decided to put my open-access money where my electronic-only mouth is, and submit the forthcoming Archbishop description to a PLoS journal. In response to a challenge from Andy Farke, I rather precipitately made a public commitment to do my level best to get that paper submitted this calendar year; and while that may not actually happen, having that goal out there can only help. Seeing that gorgeous quarry photo of Spinophorosaurus was what tipped me over the edge into wanting to use PLoS. My plan is to describe the living crap out of that bad boy, photograph every element from every direction and put the whole lot in the paper — make the paper as close as possible as a surrogate for the specimen itself. Only PLoS (to my knowledge) can do this.
(Of course, once you start wanting to include other kinds of information in your publications — videos, 3d models, etc. — then an electronic-only venue is literally your only option.)
I leave you with two photos of “Cervical P” of the Archbishop; commentary by Matt. These images are copyright the NHM since it’s their specimen.
- Hulke, J. W. 1880. Iguanodon Prestwichii, a new species from the Kimmeridge Clay, distinguished from I. Mantelli of the Wealden Formation in the S.E. of England and Isle of Wight by differences in the shape of the vertebral centra, by fewer than five sacral vertebrae, by the simpler character of its tooth-serrature, &c., founded on numerous fossil remains lately discovered at Cumnor, near Oxford. Quarterly Journal of the Geological Society 36:433-456. doi:10.1144/GSL.JGS.1880.036.01-04.36
- International Commission on Zoological Nomenclature. 2008. Proposed amendment of the International Code of Zoological Nomenclature to expand and refine methods of publication. Zootaxa 1908: 57-67, Bulletin of Zoological Nomenclature 65(4): 265-275 and various other places.
- Osborn, H. F. and C. C. Mook. 1921. Camarasaurus, Amphicoelias and other sauropods of Cope. Memoirs of the American Museum of Natural History, n.s. 3: 247-387, and plates LX-LXXXV. [HUGE download, but totally worth it.]
- Sereno, Paul C., Jeffrey A. Wilson, Lawrence M. Witmer, John A. Whitlock, Abdoulaye Maga, Oumarou Ide and Timothy A. Rowe. 2007. Structural Extremes in a Cretaceous Dinosaur. PLoS ONE 2 (11): e1230 (9 pages). doi:10.1371/journal.pone.0001230
- Taylor, Michael P. 2009. Electronic publication of nomenclatural acts is inevitable, and will be accepted by the taxonomic community with or without the endorsement of the Code. Bulletin of Zoological Nomenclature 66(3):205-214.
September 12, 2009
Back when the Xenoposeidon paper came out, we suggested that Xeno could be the first repesentative of a new sauropod “family”, and then discussed at some length: what is a “family” anyway? Now that the Brachiosaurus paper is out, and I’ve argued that the species “Brachiosaurus” brancai is generically distinct from Brachiosaurus altithorax, it’s time to talk about what a genus is (and so what “generically distinct” means).
In an unnecessarily snarky aside at the end of the last entry, I implied that Randy Irmis would be the one to say that, because my phylogeny recovered “Brachiosaurus” brancai as the sister taxon to Brachiosaurus altithorax, it could and should remain in the genus Brachiosaurus, irrespective of the morphological differences between the genera. He didn’t quite do that — although Daniel Madzia very nearly did — but Jaime Headden certainly did over on the Dinosaur Mailing List, and even ended up asking: “So my question is this: Why do we need Giraffatitan, and cannot have a Brachiosaurus proteles etc.?”
There are plenty of possible responses to this, but before we plough into that, here is a pretty picture:
Ligament rugosities on the neural spines of Brachiosaurus dorsals
The more retentive among you SV-POW! veterans might remember way back in the very first month of this blog when I showed you what I said were the last four presacral vertebrae of the Brachiosaurus altithorax holotype FMNH P25107. Actually, I don’t know what I was thinking — they were presacrals 4-7, not 1-4, but that’s not the point. The point is that Mike From Ottawa (whatever happened to him?) asked about the very rugose anterior surfaces of the neural spines, and I replied:
What the photo doesn’t show (but if you stay tuned long enough you’ll probably see one that does) is that the posterior faces of the neural spines have very similar rugosities. In life, these would have been the anchor points for epaxial muscles and ligaments. In Brachiosaurus altithorax (but not B. brancai) these have a distinctive inverted-triangle shape. In the most posterior pair of B. brancai dorsals, which are co-ossified, the ligament joining their neural spines is itself ossified. Picture to follow some time, I guess :-)
I am finally following up on the first half of that promise: the picture above shows the three most anterior of those same four presacral vertebrae from the Brachiosaurus altithorax holotype, but this time in right posterolateral view, so you can see the posterior faces of the neural spines. And you’ll notice that on the back of each spine, as well as on the front, there’s a large and extremely rough inverted triangle. I’ve yet to see anything at all like that in any other sauropod — Giraffatitan and the Archbishop included. Very distinctive.
Right then — back to genera!
Rampant genera on the loose!
Here’s a practical reason to reject the idea that if two taxa are sisters, then they should be regarded as congeneric: Jaime wants to retain the species brancai within Brachiosaurus because it is (in the current analysis) the sister to the type species Brachiosaurus altithorax. He then wants to put the species proteles into Brachiosaurus because the species we all know as Sauroposeidon proteles is (presumably) the sister to the Brachiosaurus-altithorax-and-brancai clade. But by induction, if we accept Jaime’s policy, whatever is sister to that clade must also be subsumed into Brachiosaurus, so that we end up losing Titanosauria, Camarasauridae, Diplodocoidea, etc. — Diplodocus carnegii becomes a species of Brachiosaurus. The good side of this scheme is that eventually, we’ll work our way up to the base of Amniota, at which point I become a member of the species Brachiosaurus sapiens. That, I could get on board with. But in other respects, this classification would not be so hot.
I’m assuming that no-one really wants this, and so that advocates of the Sister-Taxa-Are-Congeneric school (hereafter STAC) recognise that you have to draw a line somewhere. But where? And how do you choose where? [Only time will tell whether I just coined an AHATWNUABPANTA.]
How to choose between specific and generic separation
At this point, I am reminded of when I used to be on a mailing list for wannabe writers. Lots of dogma on that list — people saying “don’t overdo adverbs” and “make sure you have enough incidental detail” and so. People trying to nail down an algorithm for good writing. But the best advice I saw on that list was from Jane MacDonald: ”My personal advice is don’t overdo, or underdo, anything in your writing. Do it exactly right.”(*) That’s my attitude to drawing genus boundaries. It is, frankly, an art; and there are no substitutes for taste, experience, judgement, familiarity with the group in question and all those other touchy-feely qualities that uber-cladists would love to find a way to abolish if they could. But they can’t. There is no algorithm for this. I also think of an observation by computer scientist Bjarne Stroustrup, the inventor of the C++ programming language: “Design and programming are human activities; forget that and all is lost.” The same is true of palaeontology. (And of, well, everything.)
Here’s the thing, folks: a genus, just like any other taxon, is there to be useful. Its purpose is not to conform to a dogma, but to inform and enlighten. In the new paper, I wrote that “generic separation is warranted since the two species are more different from each other than, for example, Diplodocus and Barosaurus Marsh, 1890″ (Taylor 2009:798). I stand by that as a great way to figure out when the morphological differences between two species merit generic separation: it’s all about conveying degrees of difference. And, yes, of course I know that the morphological extent of a genus in sauropods is completely different from its extent in, say, botany, where the genus Quercus (oaks) has 700 species or something stupid. Yes, I fully accept that there is no rigorous and absolute standard by which we can determine The Right Place to drop a genus boundary. Sure. But that doesn’t let us out from the responsibility of making the best judgements that we can, based on relevant prior art, recognised conventions, congruence with similar decisions and — there it is again — good taste.
(*) Actually, that is only the second best advice I saw on the wannabe writers’ mailing list. The best advice of all came second-hand, and was passed on by Greg Gunther: “I was on an [email] list with Tom Clancy once. Mr. Clancy’s contribution to the list was, ‘Write the damn book’.” Top advice.
And so finally I come to Randy’s comment. In response to his question, I guessed that when I put them all in a matrix together, the Archbishop will form a clade with Brachiosaurus, and Sauroposeidon with Giraffatitan. Like this: ((Brachiosaurus altithorax, “The Archbishop”), (Giraffatitan brancai, Sauroposeidon proteles)).
And Randy said:
For the sake of discussion, if the topology is as you say, then I do support the generic separation of altithorax and brancai. Now, of course, as you might surmise, if the two sub-clades are well-supported, I would also advocate putting altithorax and the NHM Tendaguru taxon in the same genus, and brancai and Sauroposeidon in the same genus.
Now I yield to no man in my respect for Randy, whose work exceeds my own humble output by a truly humiliating factor, and who makes it even worse by being such a nice guy. But I hope he will not take it the wrong way if I say that here, he is talking the purest arsegravy. Suppose the topology came out the way I guessed, and we adopted his suggested nomenclature. Then five minutes later Paul Upchurch comes along with a new analysis that finds the Archbishop closer to Giraffatitan after all: and suddenly Brachiosaurus archbishopus becomes Giraffatitan archbishopus. Five more minutes pass and Jeff Wilson publishes his new phylogeny, in which “Sauroposeidon” proteles is sister to Brachiosaurus altithorax, and so what was briefly Giraffatitan proteles becomes Brachiosaurus proteles. Later that afternoon Jerry Harris shows that Cedarosaurus is more closely related to Brachiosaurus altithorax than the species proteles is: at this point, presumably, either Cedarosaurus gets sunk into Brachiosaurus, as B. weiskopfae, or My Big Fat Brachiosaurus Genus gets smashed up and suddenly, woah, proteles needs its own genus after all and Sauroposeidon is back!
Hands up who wants to deal with tracking all that nomenclatural shifting back and forth? Hmm, thought not. Folks, when we name a new species of an existing genus we are betting the nomenclature on the phylogenetic hypothesis. This is just a dumb thing to do in this day and age — especially if you work on dinosaurs which (A) are big and usually very incomplete and so their positions can’t be known with certainty; (B) are trendy enough to be subject to a stream of new phylogenetic analyses; and (C) are in a field where pretty much everyone seems to be hot for mandatory monophyly of genera.
So I end with a plea: unless you know for certain that your new taxon is super-closely related to the type species of an existing genus, and unless you are sure that this isn’t going to change with subsequent discoveries, please put your new species in its own monospecific genus. That way, nomenclature is independent from phylogeny, which is surely how we all want it. A new monospecific genus is essentially a uninomial that happens to be spelled with a space in the middle. And uninomials are nice: they rescue us from Linnaeus’s dumb mistake in lumbering nomenclature with binomials.
This has been an Unwelcome Education Product.
Many thanks to Jim Farlow for suggesting the title of this post, which I have cheerfully stolen. I have no idea whether he agrees with the arguments presented in this article.
For those of you who care about such things, the new issue 66(2) of the Bulletin of Zoological Nomenclature contains two comments on our petition to the ICZN to fix Cetiosaurus oxoniensis as the type species of the historically important genus Cetiosaurus (Upchurch et al. 2009) — both of them supporting the proposal (Barrett 2009 and Galton 2009).
Paul Barrett wrote (in part):
Cetiosaurus was the first sauropod dinosaur to be scientifically described (Owen, 1841) and one of the earliest dinosaurs to be recognised: the taxon is clearly of historical importance and stabilising its taxonomy would represent an important contribution to dinosaur studies.
Cetiosaurus is not only a historically important taxon, but also one that has been used to specify other groups within Dinosauria, including Cetiosauridae. In addition, Ornithischia, one of the major dinosaur sub-groups, has been defined as all dinosaurs that are more closely related to Iguanodon than they are to Cetiosaurus (Norman et al., 2004).
(I’d completely missed that use of Cetiosaurus as an external specifier for Ornithischia, which I suppose just goes to show that I should pay more attention to the ornithischian literature.)
Pete Galton wrote (in part):
It should be noted that the “Monograph of the genus Cetiosaurus” by Owen (1875) is based almost entirely on the Bletchington Station material of C. oxoniensis (Owen even used Phillips’ figures!). Also, as noted by Galton & Knoll (2006), the family CETIOSAURIDAE Lydekker, 1888 is based on C. oxoniensis Phillips, 1871 because Lydekker (1888, p. 137) indicated it as being the type species of Cetiosaurus Owen.
More good arguments there for the conservation of prevalent usage by formally recognising C. oxoniensis.
Anyone else who has strong feelings on this subject, either way, should get them in writing to the Executive Secretary, ICZN., c/o Natural History Museum, Cromwell Road, London SW7 5BD, U.K. (e-mail: firstname.lastname@example.org).
- Barrett, Paul B. 2009. Comment on the proposed conservation of usage of Cetiosaurus Owen, designation of Cetiosaurus oxoniensis Phillips, 1871 as the type species [comment 1 of 2]. Bulletin of Zoological Nomenclature 66(2): 187-188.
- Galton, Peter M. 2009. Comment on the proposed conservation of usage of Cetiosaurus Owen, designation of Cetiosaurus oxoniensis Phillips, 1871 as the type species [comment 2 of 2]. Bulletin of Zoological Nomenclature 66(2): 187-188.
- Galton, Peter M., and Fabien Knoll. 2006. A saurischian dinosaur braincase from the Middle Jurassic (Bathonian) near Oxford, England: from the theropod Megalosaurus or the sauropod Cetiosaurus? Geological Magazine 143: 905921.
- Lydekker, Richard. 1888. Catalogue of the fossil Reptilia and Amphibia in the British Museum (Natural History), Cromwell Road, S.W. Part 1. Containing the orders Ornithosauria, Crocodylia, Dinosauria, Squamata, Rhynchocephalia, and Proterosauria. British Museum (Natural History), London.
- Norman, David B., Lawrence M. Witmer, and David B. Weishampel. 2004. Basal Ornithischia. pp. 325334 in David B. Weishampel, Peter Dodson and Halszka Osmólska (eds.), The Dinosauria, Second edition. University of California Press, Berkeley and Los Angeles. 861 pp.
- Owen, Richard. 1841. A description of a portion of the skeleton of Cetiosaurus, a gigantic extinct saurian occurring in the Oolitic Formation of different parts of England. Proceedings of the Geological Society of London 3: 457-462.
- Owen, Richard. 1875. Monograph of the Mesozoic Reptilia, part 2: Monograph on the genus Cetiosaurus. Palaeontolographical Society Monograph 29: 2743 and plate X.
- Phillips, John. 1871. Geology of Oxford and the Valley of the Thames. Clarendon Press, Oxford.
- Upchurch, Paul and John Martin. 2002. The Rutland Cetiosaurus: the anatomy and relationships of a Middle Jurassic British sauropod dinosaur. Palaeontology, 45(6): 1049-1074.
- Upchurch, Paul, John Martin, and Michael P. Taylor. 2009. Case 3472: Cetiosaurus Owen, 1841 (Dinosauria, Sauropoda): proposed conservation of usage by designation of Cetiosaurus oxoniensis Phillips, 1871 as the type species. Bulletin of Zoological Nomenclature 66(1): 51-55.
I have a much less realised view of the digital future than Matt does, so I won’t be making a lot of predictions here. But I do have some questions to ask, and — predictably — some whining to do.
What counts, what doesn’t, and why?
Assuming you have made some science (e.g. a description of fossil, a palaeobiological hypothesis supported by evidence, a taxonomic revision), there are plenty of different ways you can present it to the world. I may have missed some, but here are the ones I’ve thought of, in roughly descending order of respectability/citability/prestige:
- Peer-reviewed paper/book chapter
- Unreviewed paper/book chapter
- Peer-reviewed electronic-only paper
- Published abstract (e.g. for SVP)
- Conference talk
- Conference poster
- Online supplementary information
- Blog post
- Blog comment
- Email to the DML (which is archived on the web)
- Personal email
- Chat over a beer
How many of these are Science? Where is the line? Is the line hard or fuzzy? Why is it OK to cite SVP abstracts but not so much SVPCA abstracts? And other such questions. I think a very good case can be made that dissertations — provided they are made available — are better sources than conference talks, posters and abstracts; and a pretty good case can be made that blog posts are (especially when webcitation’ed — see below). Both dissertations and (good) blog posts have the advantage over talks and posters that they have a permanent existence, and over abstracts the simple fact that they are substantial: a 200-word abtract cannot, by its very nature, say anything much.
Unfortunately, for nomenclatural purposes, the ICZN’s Article 8 currently says that only publications on paper count, period, which counts out dissertations. I say unfortunately because were it not for this rule, then at least part of Aetogate would never have happened: the ramifications of Bill Parker’s case would not have been so awful if the perfectly good description of Heliocanthus in his (2003) dissertation had been allowed priority over Lucas et al.’s (2006) rush-job which attached the name Rioarribasuchus to the same specimen. Happily, the ICZN is as we write this considering an amendment to recognise nomenclatural acts in electronic-only publications. There has already been some published discussion of the pros and cons of this amendment, and the Commission is actively soliciting further comments, so those of you with strong feelings should put them in writing and send them to the Executive Secretary. (I will certainly be doing so.)
We all know that blog entries are Not Sufficiently Published to be citable, at least in most journals; but are they Too Published to let you re-use the same material? When you submit to most journals, they ask you to formally state “this material has not previously been published” — is that true if we’ve blogged it? I am guessing different editors would answer that differently. For what it’s worth, we’ve been reasonably careful up till now not to blog anything that we’re planning to make into a paper — which is why we were so mysteriously silent on the obviously important topic of sauropod neck posture during the first 19 months of SV-POW!. We’ve not been 100% pure on this: for example, I have a paper on Brachiosaurus in press that mentions in passing the spinoparapophyseal laminae, absence of an infradiapophyseal laminae and perforate anterior centroparapophyseal laminae of the 8th dorsal vertebra of the Brachiosaurus brancai specimen HMN SII — the features that I have blogged here in detail, with illustrations that would certainly never have been given journal-space. Since the relevant passage in my paper accounted for half a manuscript page (of a total of 75 pages), I’m assuming no-one’s bothered about that. In a case like this, I guess the SV-POW! posts are best thought of as pre-emptive and unofficial online supplementary information.
Counts for what purpose?
We’ve already mentioned that dissertations, blog entries and suchlike don’t count for nomenclatural purposes. Whether they count in the sense of being citable in published works is up for debate right now (and again, see below on webcitation). It seems pretty clear that these forms of “grey publication” do count in establishing people’s reputations among their peers — dissertations are obviously important in this regard, and Darren’s ridiculously broad knowledge of tetrapods extant and extinct is near-universally recognised largely because of his blogging efforts (although you could argue — and Matt and I often have argued — that he might have been able to enhance his reputation even more if he’d taken some of that blogging time and invested it in formal publications). Conversely, it’s clear that blogs, however rigorous and scientific, count for squat when it comes to committees. The world of dinosaur palaeontology is probably just as aware of Matt’s series of Aerosteon response articles here on SV-POW! as it would be if he’d put those together into a paper that was published in PLoS ONE; but when his tenure committee comes to count up the impact factors of the journals he’s published in, those articles will count for nothing. One day that might change, but not while impact factors still exert their baleful influence.
Deciding what to blog and what to write up as a “proper paper”
Matt posted his response to the Aerosteon paper as a sequence of three blog entries even though he knew that what he had to say was substantial enough to make a paper. Why throw away a potential publication that would look good on the CV? Because he wanted to get it out there ASAP, and didn’t want to wait until all the media dust had settled. So he fought people off when they pestered him to publish it as a paper. He doesn’t really need to do it now, and he doesn’t really have time (especially since I keep badgering him about all the papers we’re supposed to be collaborating on). If we were starving for publications, we could turn a lot of SV-POW! posts into LPUs — but we’re not starving.
Let me explain this by taking a digression though the economics of file-sharing and the way labels persistently — maybe deliberately — misunderstand them. Let’s imagine for the sake of an example that a while back, I sent Matt the MP3s that make up Blue Oyster Cult’s awesome Fire Of Unknown Origin album. Now anyone with their brain switched on can see that the net effect of this on his music-buying pattern would be positive: if he really liked Fire, there is a fair chance that he would then have gone and bought a BOC album or two, or three — just as I’ve been buying Dar Williams albums like crazy since someone slipped me MP3s of Mortal City. The labels’ perception, however, is that instead I would have denied them a sale: that if I’d not sent the Fire of Unknown Origin MP3s, Matt would of course have bought his own legitimate copy, and so I’ve stiffed them out of $6.99 less whatever tiny slice they pass on to the artist. The misunderstanding here is that they think — or would like to think, who knows if they really believe this themselves? — that people’s music consumption is limited by the time we have available to listen to music, and that one way or another we will obtain enough music to fulfil that need: for free if possible, but by paying for it if necessary. But the truth is completely different: there would be zero chance of Matt’s ever buying any BOC album, since he’d never even heard of them (beyond Don’t Fear The Reaper, I guess) whereas in the hypothetical universe where I sent him the Fire MP3s, there is a non-zero chance. And the labels’ failure to understand that is because of a wholly incorrect model of what factor limits music listening.
Digression ends. Its relevance is this: in the same way, we are used to thinking that our ability to get papers published is limited by the number of publication-worthy ideas we have — so that every paper idea we “waste” on a blog entry is a net loss. In truth, ideas are cheap, and our ability to get papers published is actually limited by our throughput — our ability to find time to actually write those ideas up with sufficient rigour, prepare high-resolution figures, format the manuscripts for journals, wait through the review period, deal with the reviews, revise, resubmit, handle editorial requests, and so on and on. (That is especially true when the journal takes six months to come up with a rejection.) This is why Matt and I, like everyone else I know in palaeo who I’ve discussed this with, have huge stacks of POOP that we’ve not yet found time to convert into papers. So when we spend a paper-worthy idea on a blog entry, we’re not wasting it: we’re putting it out there (in an admittedly inferior format) when otherwise it would never have made it out there at all. The remaining issue is whether the time we spend on blogging an idea would have been better spent on moving a paper further towards publication. Maybe, sometimes. But you have to stop and smell the roses every now and again. So the real cost of SV-POW! for us is not the “waste” of paperable ideas, but the time we spend on writing it. I am guessing that in the time I’ve put into SV-POW! so far, I could have got two more papers out — certainly one. Has it been worth it? I think so, but it’s not a no-brainer. On the other hand, SV-POW! probably acts as a reader-funnel, so that when I do get a paper out, more people read it than otherwise would. How big that effect is, I don’t know, and I can’t think of a way to measure it.
How to cite blog entries: WebCite
One of the great things about writing for SV-POW! is that you can learn some really useful stuff from the comments; and the most useful comment I’ve seen so far is the one in which Cameron Neylon pointed us at WebCite (http://webcitation.org/). This is a superbly straightforward site that makes permanent archive copies of web-pages, and mirrors them around the world. In doing so, it deals with the problems of web pages being vulnerable to disappearance and prone to change. (In off-list emails with Matt, I had suggested that I might build something like this myself, as I am software engineer in my day job; I am delighted that these guys have done it properly instead.) So if you ever want to cite Matt’s second Aerosteon post in a journal, use the archive URL http://webcitation.org/5hPYTmWpW — and if you want to cite any other SV-POW! article, just submit its URL to WebCite yourself, and get back an archive URL which you can use. And tell all your friends about WebCite!
Oh, and by the way …
Here’s that photo of a monitor lizard getting its arse kicked by an elephant that you ordered:
- Lucas, S. G., Hunt, A. P. and Spielmann, J. A. 2006. Rioarribasuchus, a new name for an aetosaur from the Upper Triassic of north-central New Mexico. New Mexico Museum of Natural History and Science, Bulletin 37: 581-582.
- Parker, W. G. 2003a. Description of a new specimen of Desmatosuchus haplocerus from the Late Triassic of Northern Arizona. Unpublished MS thesis. Northern Arizona University, Flagstaff. 315 pp.
March 31, 2009
Today saw the publication of the most startlingly dull paper I’ve ever been involved in (Upchurch et al. 2009) — and remember, I write this as co-author of a paper on the phylogenetic taxonomy of Diplodocoidea. Not only that, but one time when I was practising a conference talk with my wife Fiona as audience, she fell asleep actually while I was speaking. Actually asleep. And yet the new paper beats them all hands-down for boredom. If you don’t believe me, feast your eyes, gloat your soul, on the accursed ugliness of the very title of the new paper: “Case 3472: Cetiosaurus Owen, 1841 (Dinosauria, Sauropoda): proposed conservation of usage by designation of Cetiosaurus oxoniensis Phillips, 1871 as the type species.” What is it all about?
Well, take a look at the type material of Cetiosaurus:
Yes indeed — the most historically important of all sauropods is based on a set of non-diagnostic uninformative eroded partial mid-to-distal caudal centra. That is because this is the type material of the species which, for complex technical reasons, is the type species of the genus Cetiosaurus. We tend to ignore this fact because the material is clearly rubbish: the taxon C. medius is not valid. Sadly, however, the name C. medius is valid — nomenclaturally valid, even though it’s not taxonomically valid. But the International Code of Zoological Nomenclature (ICZN), which governs all zoological nomenclature, is purely a code of nomenclature, and does not take taxonomic considerations such as diagnosability into account. (It can’t, after all: how could the code contain rigorous rules that let you determine whether material is diagnostic, or whether a description is adequate?)
Anyway, the material of C. brevis, C. brachyurus, C. medius and C. longus, all published together (Owen 1842) is all pretty useless; but Phillips (1871) described in detail the much better material of a new species C. oxoniensis, and this is what everyone has meant by the name Cetiosaurus ever since. Upchurch and Martin (2003:215) even explicitly stated that they were provisionally using C. oxoniensis as the de facto type speces, pending a petition to the ICZN to overrule strict priority. And no wonder: the C. oxoniensis material really is way better. For example, check out this dorsal vertebra (which is by no means the best one — just one that I have a convenient photo of):
Today’s new paper is that long-promised petition: in it, we recount the nomenclatural history of the name Cetiosaurus and its species, explain with a big list of references that C. oxoniensis has been overwhemingly used historically and is overwhelmingly used today, and ask the Commission to legitimise this universal behaviour.
Will they do it? We actually don’t know, although I can’t think of any reason why they shouldn’t. The process now is that interested workers can send their comments, either in favour of or against our proposal, to the Executive Secretary of the ICZN (address at the end of the PDF), and these comments are weighed before a decision is returned. From my informal sampling of previous petitions, the process seems to take between one and two years. So we’re probably stuck in type-species limbo until 2011. Oh well — at least the main step has been taken.
So. I’m not exactly as excited about this paper as I was of Xenoposeidon — don’t worry, we won’t be launching a nine-post Cetiosaurus Type Species Redesignation Week — nor as pleased with it as I am with a certain in-press paper that all three of us SV-POW!sketeers are very much looking forward to because REDACTED. But it’s a dirty job that someone had to do.
- Owen, Richard. 1841. A description of a portion of the skeleton of the Cetiosaurus, a gigantic extinct saurian reptile occurring in the oolitic formations of different portions of England. Proceedings of the Geological Society of London 3: 457-462.
- Owen, Richard. 1842b. Report on British fossil reptiles, Part II. Reports of the British Association for the Advancement of Science 11: 60-204.
- Phillips, John. 1871. Geology of Oxford and the valley of the Thames. Clarendon Press, Oxford.
- Upchurch, Paul, and John Martin. 2003. The anatomy and taxonomy of Cetiosaurus (Saurischia, Sauropoda) from the Middle Jurassic of England. Journal of Vertebrate Paleontology 23: 208-231.
- Upchurch, Paul, John Martin, and Michael P. Taylor. 2009. Case 3472: Cetiosaurus Owen, 1841 (Dinosauria, Sauropoda): proposed conservation of usage by designation of Cetiosaurus oxoniensis Phillips, 1871 as the type species. Bulletin of Zoological Nomenclature 66 (1): 51-55.
Update (3 April 2009)
Here’s that photograph of a leopard seal pulling the head right off a penguin you ordered:
Acknowledgement: I got this photo from http://img238.imageshack.us/img238/873/1627.jpg. Thanks to “Paul A.” (see comment below) I now know that it is the work of Paul Nicklen who has a stellar collection of photographs on his own site. This picture is entitled The Death Shake, and is the 10th of the 29 pictures in his leopard seal gallery.
Relevant Update (31 August 2010)
I should have noted this long ago, but back in July 2009 (more than a year ago!) Paul Barrett and Pete Galton both published comments in the BZN that were supportive of our petition.