Many SV-POW! readers will already be aware that the entire editorial staff of the Elsevier journal Lingua has resigned over the journal’s high price and lack of open access. As soon as they have worked out their contracts, they will leave en bloc and start a new open access journal, Glossa — which will in fact be the old journal under a new name. (Whether Elsevier tries to keep the Lingua ghost-ship afloat under new editors remains to be seen.)
Today I saw Elsevier’s official response, “Addressing the resignation of the Lingua editorial board“. I just want to pick out one tiny part of this, which reads as follows:
The article publishing charge at Lingua for open access articles is 1800 USD. The editor had requested a price of 400 euros, an APC that is not sustainable. Had we made the journal open access only and at the suggested price point, it would have rendered the journal no longer viable – something that would serve nobody, least of which the linguistics community.
The new Lingua will be hosted at Ubiquity Press, a well-established open-access publisher that started out as UCL’s in-house OA publishing arm and has spun off into private company. The APC at Ubiquity journals is typically £300 (€375, $500), which is less than the level that Elsevier describe as “not sustainable” (and a little over a fifth of what Elsevier currently charge).
Evidently Ubiquity Press finds it sustainable.
You know what’s not sustainable? Dragging around the carcass of a legacy barrier-based publisher, with all its expensive paywalls, authentication systems, Shibboleth/Athens/Kerberos integration, lawyers, PR departments, spin-doctors, lobbyists, bribes to politicians, and of course 37.3% profit margins.
The biggest problem with legacy publishers? They’re just a waste of money.
October 27, 2015
When I separated my cat’s head from its body, the first five cervical vertebrae came with it. Never one to waste perfectly good cervicals, I prepped them as well as the skull. Here they are, nicely articulated. (Click through for high resolution.) Dorsal view at the top, then right lateral (actually, slightly dorsolateral) and ventral view at the bottom.
Or you may prefer the same image on a black background:
For those of us used to sauropod necks, where the atlas (C1) is a tiny, fragile ring, mammal atlases look bizarre, with their grotesque over-engineering and gigantic wings.
October 19, 2015
I imagine that by now, everyone who reads this blog is familiar with Mark Witton’s painting of a giant azhdarchid pterosaur alongside a big giraffe. Here it is, for those who haven’t seen it:
(This is the fifth and most recent version that Mark has created, taken from 9 things you may not know about giant azhdarchid pterosaurs.)
It’s one of those images that really kicks you in the brain the first time you see it. The idea that an animal the size of a giraffe could fly under its own power seems ludicrous — yet that’s what the evidence tells us.
But wait — what do we mean by “an animal the size of a giraffe”? Yes, the pterosaur in this image is the same height as the giraffe, but how does its weight compare?
Mark says “The giraffe is a big bull Masai individual, standing a healthy 5.6 m tall, close to the maximum known Masai giraffe height.” He doesn’t give a mass, but Wikipedia, citing Owen-Smith (1988), says “Fully grown giraffes stand 5–6 m (16–20 ft) tall, with males taller than females. The average weight is 1,192 kg (2,628 lb) for an adult male and 828 kg (1,825 lb) for an adult female with maximum weights of 1,930 kg (4,250 lb) and 1,180 kg (2,600 lb) having been recorded for males and females, respectively.” So it seems reasonable to use a mass intermediate between those of an average and maximum-sized male, (1192+1930)/2 = 1561 kg.
So much for the giraffe. What does the azhdarchid weigh? The literature is studded with figures that vary wildly, from the 544 kg that Henderson (2010) found for Quetzalcoatlus, right down to the widely cited 70 kg that Chatterjee and Templin (2004) found for the same individual — and even the astonishing 50 kg that seems to be favoured by Unwin (2005:192). In the middle is the 259 kg of Witton (2008).
It occurred to me that I could visualise these mass estimates by shrinking the giraffe in Mark’s image down to the various proposed masses, and seeing how credible it looks to imagine these reduced-sized giraffes weighting the same as the azhdarchid. The maths is simple. For each proposed azhdarchid mass, we figure out what it is as a proportion of the giraffe’s 1561 kg; then the cube root of that mass proportion gives us the linear proportion.
- 544 kg = 0.389 giraffe masses = 0.704 giraffe lengths
- 259 kg = 0.166 giraffe masses = 0.549 giraffe lengths
- 70 kg =0.0448 giraffe masses = 0.355 giraffe lengths
Let’s see how that looks.
On the left, we have Mark’s artwork, with the giraffe massing 1561 kg. On the right, we have three smaller (isometrically scaled) giraffes of masses corresponding to giant azhdarchid mass estimates in the literature. If Don Henderson (2010) is right, then the pterosaur weighs the same as the 544 kg giraffe, which to me looks pretty feasible if it’s very pneumatic. If Witton (2008) is right, then it weighs the same as the 259 kg giraffe, which I find hard to swallow. And if Chatterjee and Templin (2004) are right, then the giant pterosaur weighs the same as the teeny tiny 70 kg giraffe, which I find frankly ludicrous. (For that matter, 70 kg is in the same size-class as Georgia, the human scale-bar: the idea that she and the pterosaur weigh the same is just silly.)
What is the value of such eyeball comparisons? I’m not sure, beyond a basic reality check. Running this exercise has certainly made me sceptical about even the 250 kg mass range which now seems to be fairly widely accepted among pterosaur workers. Remember, if that mass is correct then the pterosaur and the 259 kg giraffe in the picture above weight the same. Can you buy that?
Or can we find extant analogues? Are there birds and mammals with the same mass that are in the same size relation as these images show?
- Chatterjee, Sankar, and R. J. Templin. 2004. Posture, locomotion, and paleoecology of pterosaurs. Geological Society of America, Special Paper 376. 68 pages.
- Henderson, Donald M. 2010. Pterosaur body mass estimates from three-dimensional mathematical slicing. Journal of Vertebrate Paleontology 30(3):768-785.
- Witton, Mark P. 2008. A new approach to determining pterosaur body mass and its implications for pterosaur flight. Zitteliana 28:143-159.
Copyright: promoting the Progress of Science and useful Arts by preventing access to 105-year-old quarry maps
October 11, 2015
In my recent preprint on the incompleteness and distortion of sauropod neck specimens, I discuss three well-known sauropod specimens in detail, and show that they are not as well known as we think they are. One of them is the Giraffatitan brancai lectotype MB.R.2181 (more widely known by its older designation HMN SII), the specimen that provides the bulk of the mighty mounted skeleton in Berlin.
That photo is from this post, which is why it’s disfigured by red arrows pointing at its epipophyses. But the vertebra in question — the eighth cervical of MB.R.2181 — is a very old friend: in fact, it was the subject of the first ever SV-POW! post, back in 2007.
In the reprint, to help make the point that this specimen was found extremely disarticulated, I reproduce Heinrich (1999:figure 16), which is Wolf-Dieter Heinrich’s redrawing of Janensch’s original sketch map of Quarry S, made in 1909 or 1910. Here it is again:
For the preprint, as for this blog-post (and indeed the previous one), I just went right ahead and included it. But the formal version of the paper (assuming it passes peer-review) will by very explicitly under a CC By licence, so the right thing to do is get formal permission to include it under those terms. So I’ve been trying to get that permission.
What a stupid, stupid waste of time.
Heinrich’s paper appeared in the somewhat cumbersomely titled Mitteilungen aus dem Museum fur Naturkunde in Berlin, Geowissenschaftliche Reihe, published as a subscription journal by Wiley. Happily, that journal is now open access, published by Pensoft as The Fossil Record. So I wrote to the Fossil Record editors to request permission. They wrote back, saying:
We are not the right persons for your question. The Wiley Company holds the copyright and should therefore be asked. Unfortunately, I do not know who is the correct person.
Thank you for your enquiry.
We are currently experiencing a large volume of email traffic and will deal with your request within the next 15 working days.
We are pleased to advise that permission for the majority of our journal content, and for an increasing number of book publications, may be cleared more quickly by using the RightsLink service via Wiley’s websites http://onlinelibrary.wiley.com and www.wiley.com.
Within the next fifteen working days? That is, in the next three weeks? How can it possibly take that long? Are they engraving their response on a corundum block?
So, OK, let’s follow the automated suggestion and try RightsLink. I went to the Wiley Online Library, and searched for journals whose names contain “naturkunde”. Only one comes up, and it’s not the right one. So Wiley doesn’t admit the existence of the journal.
Well, there’s lots to enjoy here, isn’t there? First, and most important, it doesn’t actually work: “Permission to reproduce this content cannot be granted via the RightsLink service.” Then there’s that cute little registered-trademark symbol “®” on the name RightsLink, because it’s important to remind me not to accidentally set up my own rights-management service with the same name. In the same vein, there’s the “Copyright © 2015 Copyright Clearance Center, Inc. All Rights Reserved” notice at the bottom — copyright not on the content that I want to reuse, but on the RightsLink popup itself. (Which I guess means I am in violation for including the screenshot above.) Oh, and there’s the misrendering of “Museum für Naturkunde” as “Museum fÃ¼r Naturkunde”.
All of this gets me precisely nowhere. As far as I can tell, my only recourse now is to wait three weeks for Wiley to get in touch with me, and hope that they turn out to be in favour of science.
It’s Sunday afternoon. I could be watching Ireland play France in the Rugby World Cup. I could be out at Staverton, seeing (and hearing) the world’s last flying Avro Vulcan overfly Gloucester Airport for the last time. I could be watching Return of the Jedi with the boys, in preparation for the forthcoming Episode VII. Instead, here I am, wrestling with copyright.
How absolutely pointless. What a terrible waste of my life.
Is this what we want researchers to be spending their time on?
Update (13 October 2015): a happy outcome (this time)
I was delighted, on logging in this morning, to find I had email from RIGHTS-and-LICENCES@wiley-vch.de with the subject “Permission to reproduce Heinrich (1999:fig. 16) under CC By licence” — a full thirteen working days earlier than expected. They were apologetic and helpful. Here is key part of what they said:
We are of course happy to handle your request directly from our office – please find the requested permission here:We hereby grant permission for the requested use expected that due credit is given to the original source.If material appears within our work with credit to another source, authorisation from that source must be obtained.Credit must include the following components:– Journals: Author(s) Name(s): Title of the Article. Name of the Journal. Publication year. Volume. Page(s). Copyright Wiley-VCH Verlag GmbH & Co. KGaA. Reproduced with permission.
So this is excellent. I would of course have included all those elements in the attribution anyway, with the exception that it might not have occurred to me to state who the copyright holder is. But there is no reason to object to that.
So, two cheers for Wiley on this occasion. I had to waste some time, but at least none of it was due to deliberate obstructiveness, and most importantly they are happy for their figure to be reproduced under CC By.
- Heinrich, Wolf-Dieter. 1999. The taphonomy of dinosaurs from the Upper Jurassic of Tendaguru, Tanzania (East Africa), based on field sketches of the German Tendaguru expedition (1909-1913). Mitteilungen aus dem Museum fur Naturkunde in Berlin, Geowissenschaftliche Reihe 2:25-61.
September 22, 2015
The process of reassembling my cat skull continues. I now have the sphenoid and both nasals now back in place, and the time has come for the now-traditional multiview. (Previous examples: pig skull, wallaby skull, sheep skull.
Click through for seriously high resolution (9602 × 7642).
And here it is on a black background:
As though you need to be told: the top row shows the dorsal view, the middle row (from left to right) shows posterior, right lateral and anterior views, and the bottom row shows the ventral view.
September 17, 2015
Regular readers will remember that I recently fished my cat skull out of the tub where invertebrates had been hard at work defleshing it, and put it to soak — first in soapy water, then in clean water, and finally in dilute hydrogen peroxide. It was in a pretty terrible state, having either been smashed by a car, or damaged by my rather unsophisticated process of removing the head from the torso. Here’s a reminder:
After bleaching in H2O2, the skull parts looked much better, but were still very delicate. Here is the main portion of the cranium, missing the braincase and the right upper jaw, upside down, in right posteroventral view.
Putting it back together was difficult. I am using regular water-soluble wood glue, largely so that if I make a mistake I can just soak the wrongly-joined bits apart and try again.
I started by gluing the braincase (at the top of the plate in the first picture) onto the back of the main cranium piece. Unfortunately, as you’ll see below, I wasn’t able to get a very clean join — I can only assume that one or other part was slightly distorted by whatever force broke the skull apart. Still, having done that, I had a better platform to reattach the right upper jaw (lower left of the plate). I was then able to reattach the broken-off part of the right zygomatic arch (at about 4 o’clock on the plate, just to the right of the lower of the two dentaries, and below a vertebra). It didn’t fit quite right, but what can you do? FInally, I was able to reattach another small piece — at 6:30 pm on the plate — which I think is part of the left auditory bulla.
That gave me a workable cranium (though I have some bits left over — see below.) It was time to repair the right dentary. Its articular cylinder (not really a condyle, despite its name) had somehow got blasted off, as had its retroarticular process: it was quite satisfying to figure out how those Shards Of Mediocrity fitted onto the main part of the dentary.
With that done, I had to glue together the two dentaries. That’s hard to do: it’s awkward to brace them in position for the glue to set, and difficult to get the angle between the two bones correct so that the two articular cylinders both sit neatle in their receptacles in the cranium. Here’s the solution I came up with:
I rested the cranium upside down, covered the jaw with some thin, pliant plastic (actually a sandwich bag) and used the cranium itself as a perfectly proportioned brace to hold the dentaries in place. Then I was able to glue them more or less correctly, and to reinforce the joint with more glue once the first lot had set.
I’ve still not got it quite right — the mandibular symphysis is wonky — but I think it will do. And if I change my mind, I can always soak the mandible apart and try again.
(As a matter of fact, I’d already done that once, having initially glued the dentaries together at the wrong angle, so that the assembled mandible was too narrow, and wouldn’t articulate properly with the cranium.)
So now I have a pretty good mandible and cranium, as well as the first five cervical vertebrae (all but one of the postzygs of C5, which was lost in the head-removal process.) Here is the whole thing, put together, in dorsal view:
(You can see where the left zygomatic arch is damaged: the bones are not articulating correctly, as they do on the right.)
And here is the same assembly in left dorsolateral view:
And finally, the skull in anterodorsal view:
Note that the left canine is truncated. I am completely certain that this, at least, is not my doing, and must be damage that was done in life. Note, too, how the mandible is visibly wonky from this angle. Hmm. Maybe I will reset it again.
At the end of this process, I have a pretty nice cat skull. Unfortunately, I have seven shards left over, none of them more than about fifteen millimeters long. Here they are:
I’d welcome any help in figuring out what these bits are, and where on the skull they should be reattached. I don’t want to just throw them away. Click through for much higher resolution to get a better idea of what’s what. The top right piece is such a weird shape that someone must know what it is. The two peices at bottom right seem to be pairs, but I don’t know what they are a pair of. The rest? No idea.
I leave you with the dorsal view again, but this time in glorious 3D for those of you who have been wise enough to get some red-cyan 3D glasses. (Seriously folks, they’re like fifty cents a pair. Just get some. You won’t regret it.)
Some time soon: those first five cervicals in more detail.
September 11, 2015
Just under a year ago, the children across the road, who know I’m interested in comparative anatomy, told me that they’d found a dead cat by the side of the road, and asked whether I wanted it. Silly question, of course I did!
I’ve learned from bitter experience that prepping the whole skeleton out of an animal is a very time-consuming process — so time-consuming that I usually just don’t get around to it. This time, I thought I’d just do the skull. So I removed the head (not a pleasant process) and discarded the body.
I did the usual sequence of simmerings with the head, peeling off the skin and fur, then removing muscle, till I was down to just bone, gristle, and the hard-to-remove bits of soft tissue that always adhere in one place or another. At that point, I left the bones in a plastic tub in the woodshed, with a couple of holes in the lid so that invertebrates could get in and deal with the remaining gloop.
Yesterday I had a look (and a smell), and it seems all the soft-tissue is gone, thanks to the hard work of the tiny collaborators who never make it into the acknowledgements. So I soaked the skull pieces in soapy water for a day. Then today, I rinsed them off and left them to soak in pure water for a few hours. Finally, I changed the water, and added some H2O2 to degrease the bones. They are now foaming away merrily. Tomorrow I’ll take them out, rinse them off one more time, dry them, and see what state they’re in.
Here’s how they look today, after rinsing:
And here is a closeup of a mandible (slightly foreshortened):
“But Mike”, you ask, “Why is it in so many pieces?”
I actually don’t know. As I was taking the head apart, it seemed to be whole, but as it got down to the raw bone, it was apparent that the skull was very badly damaged. In the picture above, the main part of the cranium is upside down, half way down the left hand side. Below it is the rest of the cranium, the left side of the upper jaw. Above that is the back of the cranium, most of the braincase. The whole thing just came apart into three pieces — and not along sutures. This is breakage.
I’m not sure how it happened. At first, I thought it must be how the cat died — maybe struck a glancing blow by a car. But I increasingly wonder whether I stupidly did this myself in the process of removing the head from the torso. (I did not use a scalpel.)
Anyway, we’ll see how well the pieces can be reassembled once they have dried out. I’m optimised that I can still wind up with a pretty good cat skull.