February 21, 2014
February 19, 2014
Previous posts in this series are here.
February 17, 2014
This whole section, including the title, is mostly swiped from Mike’s Tutorial 17.
Other posts in this series are here.
Papers referenced in these slides:
- Farke, Andrew A., and Sertich, Joseph J.W. 2013. An abelisauroid theropod dinosaur from the Turonian of Madagascar. PLoS ONE 8(4): e62047. doi:10.1371/journal.pone.0062047 [PDF]
- Taylor, Michael P., Mathew J. Wedel and Richard L. Cifelli. 2011. A new sauropod dinosaur from the Lower Cretaceous Cedar Mountain Formation, Utah, USA. Acta Palaeontologica Polonica 56(1):75-98. doi: 10.4202/app.2010.0073
- Wedel, Mathew J., and Michael P. Taylor. 2013. Caudal pneumaticity and pneumatic hiatuses in the sauropod dinosaurs Giraffatitan and Apatosaurus. PLOS ONE 8(10):e78213. 14 pages. doi:10.1371/journal.pone.0078213 [PDF]
February 15, 2014
February 14, 2014
Last time, we took a very quick look at YPM 1910, a mounted skeleton that is the holotype of Camarasaurus (= “Morosaurus“) lentus, in the dinosaur hall of the Yale Peabody Museum.
Here’s the whole skeleton, in various views. Skip down to the bottom for the science; or just enjoy the derpiness. First, in anterior view:
Here’s a more informative right anterolateral view. As you can see, this little Camarasaurus is in every sense in the shadow of the the much more impressive Apatosaurus (= “Brontosaurus“) excelsus holotype, YPM 1980: click through for the full image:
And here’s the corresponding photo from Lull (1930: figure 1) (see below):
It’s interesting to see such a familiar mount in such unfamiliar surroundings. Judging by the cabinets in the background, YPM 1910 was mounted in what’s now the dinosaur hall at Yale — i.e. it hasn’t moved since the photo was taken. But back then, Brontosaurus hadn’t been mounted, and Zallinger’s mural hadn’t been painted.
If you thought this animal looked dumb from the front, check out this left anterodorsolateral view, taken from the balcony above the hall. The foreshortening of the neck makes Cam look like a particularly dense puppy.
(Once more, click through for the full version of the photo, including the much more impressive Apatosaurus.)
Right lateral view, with Zallinger’s justly famous mural in the background. Note the Diplodocus-type double-beamed chevrons in the tail:
Here’s the justly under-rated posterior view:
And finally, Lull’s left posterolateral photo — taken from a position that can’t now be replicated, due to the inconveniently located Brontosaurus. (The Archelon in the background, which was previously featured on SV-POW!, has been moved to the end of the hall since Lull’s time.
How much of this skeleton is real? Happily, not the skull. We can only hope that the real thing wasn’t quite so troubling. But much of the rest of the skeleton is real bone. To quote Lull (1930:1-3):
In the Yale specimen the entire vertebral column is present from the second or third cervical to the tenth caudal with one or two later caudals. Of the limbs and their girdles there are present the left scapula, right coracoid, both humeri, the left radius and ulna, both ilia, the right pubis and left ischium, and both femora, tibiae and fibulae. One cervical rib is present but no thoracic ribs. The disarticulated sacrum lacked one rib from either side.
(How could Lull have been unsure whether the most anterior preserved cervical was the second or third? C2 in sauropods, as in most animals, is radically different from the subsequent cervicals. He does go on to say that only the centrum of the most anterior vertebra is preserved, but the axis has a distinct anterior central articulation.)
Lull is quite ready to criticise the mount, and notes in particular:
The cervical ribs in the Yale mount are not long enough by half, and the thoracic ribs may be somewhat heavy and their length a little short [...] both carpus and tarsus are probably incorrect, as the elements in each instance are fewer than shown, there being no more than two at most. There is apparently no justification for the fore and aft extensions of the distal chevrons, as these were not preserved and the Osborn-Mook restoration was followed. [...] A probable error lies in too great an allowance for cartilage between the [pelvic] elements, thus making the acetabulum seem rather large.
He also notes a scheme that sadly never came to pass:
[The holotype of Camarasaurus (= "Morosaurus") robustus], a very perfect specimen, we intend to mount when the great Brontosaurus excelsus type is completed. The three sauropods, ranging in length from 21 to nearly 70 feet, should make a very impressive group.
They would have done! But in the end it fell to the Museum für Naturkunde Berlin to give us the world’s first three-sauropod combo (unless someone knows of an earlier one?)
Finally; the mounted Yale Camarasaurus also crops up in three of the plates of Ostrom and McIntosh (1966). Plate 60 depicts metacarpals I and II in all the cardinal views except for some reason posterior; plate 61 does the same for metacarpals III and IV); and plate 70 shows the right pubis in every aspect but anterior. Here it is:Judging by this, it’s a beautifully preserved element with some very distinctive morphology. But we’ve been burned by Marsh’s plates before, and I don’t trust them at all any more — at least, not until I’ve seen the elements for myself. Now I wish I paid more attention to Derpy’s pubes.
And on that line, I’m out.
Ostrom, John H., and John S. McIntosh. 1966. Marsh’s Dinosaurs: the Collections from Como Bluff. Yale University Press, New Haven, CT. 388 pages including 65 positively scrumptious plates.
Horrible sauropod skulls of the Yale Peabody Museum, part 1: Morosaurus lentus, the world’s most foolish sauropod
February 13, 2014
Matt’s harsh-but-fair “Derp dah durr” / “Ah hurr hurr hurr” captions on his Giraffatitan skull photos reminded me that there is a sauropod with a much, much stupider head than that of Giraffatitan. Step forward YPM 1910, a mounted skeleton that is the holotype of Camarasaurus (= “Morosaurus“) lentus, in the dinosaur hall of the Yale Peabody Museum.
Full details on this specimen next time!
(But a spoiler: the skull isn’t real.)
February 12, 2014
Today (12th February) is the one-year anniversary of the first PeerJ papers! As Matt put it in an email this morning:
Hard to believe it’s been a year already. On the other hand, it’s also hard to believe that it’s only been a year. PeerJ is just such an established part of my worldview now.
That’s exactly right. PeerJ has so completely rewritten the rule-book (on price, speed and quality of service) that now when I’m thinking about new papers I’m going to write, the question I ask myself is no longer “Where shall I send this?” but “Is there any reason not to send it to PeerJ?”
Yesterday in the comments of a post on The Scholarly Kitchen, Harvey Kane asked me “I am curious as to where you get the notion that publishing OA is less expensive and in some way “better” than the traditional model?” My reply was (in part):
My notion that OA publishing yields better results than traditional is rooted in the online-only nature of articles, which allows them to ignore arbitrary limits on word-count, number of figures, use of colour, etc., and to exploit online-only formats such as video, 3d models, CT-slice stacks, etc. In my own field of vertebrate palaeontology, it’s now routine to see in PLOS ONE descriptive articles that are many times more comprehensive than their equivalents in traditional journals — see for example the recent description of the frog Beelzebufo.
Of course there is nothing specific to open-access about this: there is no technical reason why an online-only subscription journal shouldn’t publish similarly detailed articles. But my experience so far has been that they don’t — perhaps because they are tied to the mindset that pages and illustrations are limited resources.
For Beelzebufo in PLOS ONE, read baby Parasaurolophus in PeerJ, which we described as “the world’s most open-access dinosaur“. This paper is 83 pages of technicolour goodness, plus all the 3d models you can eat. And the crazy thing is, this sort of detail in descriptive papers is not even exceptional any more — see for example the recent description of Canardia in PLOS ONE, or this analysis of croc respiration in PeerJ
Years ago, I said that in the Archbishop descriptions I wanted to raise the bar for quality of illustration. Well, I’ve taken so long over getting the Archbishop done that the bar has been raised, and now I’m scrambling to catch up. Certainly the illustrations even in our 2011 description of Brontomerus are starting to look a bit old-fashioned.
And of course, the truly astonishing thing about PeerJ is that it does this so very cheaply. Because I’m already a member (which cost me $99), the Archbishop description is going to be free to me to publish this year. (This year for sure!) If we also get our Barosaurus neck preprint published properly this year,then I’ll have to find $100 to upgrade my Basic membership to Enhanced. That’s cheap enough that it’s not even worth going through the hassle of trying to get Bristol to pay for me. And if I ever hit a year when I publish three or more papers, I’ll upgrade once more (for another $100) to the Investigator plan and then that’s it: I’m done paying PeerJ forever, however many papers I publish there. (Matt jumped straight to the all-you-can-eat plan, so he wouldn’t even have to think about it ever again.)
PeerJ’s pricing is making PLOS ONE’s $1350 APC look distinctly old-fashioned; and the $3000 charged by the legacy publishers (for a distinctly inferior product) is now frankly embarrassing. You might expect that as such low prices, PeerJ’s quality of service would suffer, but that’s not been our experience: editing, reviewing, typesetting and proofing for our neck-anatomy paper were all up there with the best we’ve received anywhere.
And it’s great to see that it’s not just minor researchers like Matt and me who are persuaded by PeerJ: they’ve now accumulated a frankly stellar list of 20 universities (so far) with institutional plans for researchers to publish there. When I say “stellar” I mean that the list includes Harvard, MIT, Cambridge, Berkeley, Stanford, Johns Hopkins, UCL, Carnegie Mellon, Duke … the list goes on.
We can only hope that the next year, and the next ten and twenty, are as successful for PeerJ as the first has been; and that other New Generation publishers will join it in pushing the field forward.
I leave the last word to Matt:
I’m getting Vicki a lifetime membership for Valentine’s Day. Because I’m a romantic.
She’s a lucky, lucky woman.