Should we still give taxonomic authorities?
September 18, 2016
I have before me the reviews for a submission of mine, and the handling editor has provided an additional stipulation:
Authority and date should be provided for each species-level taxon at first mention. Please ensure that the nominal authority is also included in the reference list.
In other words, the first time I mention Diplodocus, I should say “Diplodocus Marsh 1878″; and I should add the corresponding reference to my bibliography.
Marsh (1878: plate VIII in part). The only illustration of Diplodocus material in the paper that named the genus.
What do we think about this?
I used to do this religiously in my early papers, just because it was the done thing. But then I started to think about it. To my mind, it used to make a certain amount of sense 30 years ago. But surely in 2016, if anyone wants to know about the taxonomic history of Diplodocus, they’re going to go straight to Wikipedia?
I’m also not sure what the value is in providing the minimal taxonomic-authority information rather then, say, morphological information. Anyone who wants to know what Diplodocus is would be much better to go to Hatcher 1901, so wouldn’t we serve readers better if we referred to “Diplodocus (Hatcher 1901)”
Now that I come to think of it, I included “Giving the taxonomic authority after first use of each formal name” in my list of
Idiot things that we we do in our papers out of sheer habit three and a half years ago.
Should I just shrug and do this pointless busywork to satisfy the handling editor? Or should I simply refuse to waste my time adding information that will be of no use to anyone?
References
- Hatcher, Jonathan B. 1901. Diplodocus (Marsh): its osteology, taxonomy and probable habits, with a restoration of the skeleton. Memoirs of the Carnegie Museum 1:1-63 and plates I-XIII.
- Marsh, O. C. 1878. Principal characters of American Jurassic dinosaurs, Part I. American Journal of Science, series 3 16:411-416.
Sauropod Vertebra Picture of the Week 
September 18, 2016 at 2:40 pm
I guess the old habit may be useful if disputes arise and a nomenclature/taxonomy re-shuffling takes place.
Decades later, it may not be immediately clear what organism exactly an author was referring to, and whether the nomenclature used in the paper stems from before or after a major revision.
But with the reference to author & year, it can usually be traced back.
However, it may be even more useful to cite type specimen accessions or the like?
September 18, 2016 at 11:02 pm
I’ve actually had some first-hand experience with this phenomenon in my latest manuscript and so I have had some time to think over this issue. Essentially, my opinion is that taxonomic authorities should be cited in the “Systematic Paleontology” or “Systematics” section, but not elsewhere in the manuscript.
For the Systematics section, you are essentially directly building off the classification system built by previous authors, so it makes sense to cite them. This is especially true if the definition of a clade differs between authorities (and in this specific case you may even want to mention that in the Methods section).
However, this gets annoying when it comes to the description of the paper, especially if you make any comparisons in your description. Say you are comparing the structure of the neck in sauropod dinosaurs to giraffes (Giraffa camelopardalis, ignoring the whole giraffe taxonomy issue for now). Now you have to go find out who coined the name Giraffa camelopardalis and add an additional reference to your paper for what may be a single offhand reference for an organism that everyone knows what you are talking about. This gets worse if you happen to refer to the genus by itself. E.g., “the condition in sauropods differs from Giraffa. Now you have to track down the taxonomic authority for the species, but the genus as well.
For fossil taxa, this is often less of a problem, but this issue is particularly difficult when it comes to referring to extant taxa. Many extant taxa were often published in a manner that we would not recognize today (e.g., as plates or meeting proceedings), and the original papers describing the species are often not readily available. Many of the journals that published the original descriptions are now defunct, and you may only be able to find the shortened name (or the name of the journal has changed). Interestingly, many papers that do cite taxonomic authorities for their taxon of study do not actually cite the original reference naming the species. It’s a kind of a chicken-and-egg situation.
It also makes it confusing if you are trying to refer to something in a taxon based on an observation made by another author. E.g., “The postzygapophyses of Taxon A are strongly protruding in lateral view, similar to Taxon B (Author 1, Year) (Author 2, Year)”. Who observed the state in Taxon B? Was it Author 1 or Author 2? This is not clear based on the way it is written (and I ran into this exact problem in my manuscript).
Finally, it is interesting to note that Wikipedia DOES NOT list taxonomic authorities for most of its descriptions. It will list the author, but it will not list the entire reference.
September 19, 2016 at 8:14 am
I agree with Anonymous that it should only be done in the Systematic section, but would further specify that even then, you shouldn’t need to list the full reference in the References section. Listing author and date never struck me as something done to help the reader research, but rather to honor the author and maintain the Principle of Priority.
September 19, 2016 at 3:19 pm
@Mickey Mortimer
I disagree. Listing the taxon authority in the systematics but not listing it in the references is essentially the same problem as some of these other papers where a reference is listed in the paper but not cited in the index. It also causes problems if it is not immediately obvious in what publication the name was coined. For example, George Gaylord Simpson authored around 16 papers in 1959 and 13 in 1938, many of which were solo-authored and dealt with new taxa. If I was to say taxon X was named by Simpson 1938, which paper am I talking about?
@Mike Taylor
The other thing is if it was a handling editor that asked you to put it in, I would unfortunately say you would probably have to comply. I once ran into a similar situation where the handling editor insisted I give Linnaean ranks in the Systematic Paleontology despite my preference for avoiding ranked names. Unfortunately, as you have mentioned before, the handling editor has the final say on whether your paper is or is not published, regardless of their personal quirks.
September 19, 2016 at 6:07 pm
List the taxonomic authority when dealing with taxonomy. But clearly state the specimens or references you are using when dealing with comparative anatomy. But you absolutely do have to list the reference in the references, and where ambiguous (the Simpson example, for instance), you state if it is Simpson 1938a, b, c, etc. (with proper listings in the bibliography).
(This actually is standard practice, if you look at papers that take their time to deal with information.)
September 20, 2016 at 8:40 am
That’s fair enough. It is a time consuming (if fun) effort to track down original references for non-dinosaurs when making reference lists in the Database. Google Books helps a ton. Maybe the more basic anachronism here is the Systematics section itself. Back in the day, Linnaean categories limited their number and exaggerated their usefulness, but now everything’s a member of hundreds of clades. Plus, any skilled researcher knows there are levels of uncertainty to each taxonomic assignment. So barring papers whose subject is systematics, maybe it would be best to do0 away with that format.
September 20, 2016 at 3:55 pm
I think a function is to help increase citations of taxonomic papers, specifically species naming works. As taxonomy is a “low impact” field.
September 20, 2016 at 3:58 pm
That seems like a weird function, Dean. A paper should be cited or not according as it has an actual contribution to the citing paper. Honestly, O. C. Marsh has done nothing that merits him getting a citation every time anyone mentions Diplodocus.
September 20, 2016 at 4:03 pm
Yes, in this context, but I think some are arguing it for more current publications in which authors who name new species are rarely cited and thus the profession of taxonomy is seen as unimportant.
September 21, 2016 at 8:58 am
Dean is correct. Taxonomic work is in crisis, with the number of taxonomists declining worldwide, and facing extinction for many groups (n.b. this is clearly not true for sauropod taxonomists, but it is the case for many or most living groups). One reason for this is that taxonomic works tend to be slow-burners in terms of citations and appear in low-impact journals, both of which run contra to how current research outputs are assessed by universities, museums and funding agencies. There is a serious suggestion that by citing the authorities for taxonomic names and taxonomic opinions we increase the value placed upon taxonomic research. See for example this paper for discussion:
http://sysbio.oxfordjournals.org/content/56/3/531.short
September 21, 2016 at 9:11 am
I appreciate the argument you’re making here, Richard; but where do we stop? Do we wedge in citations of other papers that we think are worthy of more credit than they’re getting? If not, why is taxonomy a special case? If so, then when does the line cross into a citation cartel? I find myself very uncomfortable with this.
September 21, 2016 at 12:39 pm
Since the topic of journal IF has come up, the fact that the publisher or journal declares its own IF should be of concern to all scientists of all disciplines. There is no way to know if the journal/publisher has its thumb on the scale, so to speak. In other words, would there be reproducibility of IF by an independent entity? Or do journals “pad” the results using shady interpretation what constitutes citation data (probably). Nature has had some commentaries about IF, but it is hard to know how much of that is sour grapes because Nature articles are not cited very often in substantial peer publications.
September 21, 2016 at 12:49 pm
Well, Ken, the situation is even worse than (I think) you realise. The impact factors that publishers and journals trumpet are not calculated by themselves, but handed down from on high by Thomson Reuters, a multinational corporation, which calculates them from secret data that no-one is allowed to see — so that it is literally impossible to replicate their figures. Worse, the number is in effect negotiated between publishers and TR.
here is the classic PLOS Medicine article about how its own IF was negotiated. Key observation: “During the course of our discussions with Thompson Scientific, PLoS Medicine’s potential impact factor— based on the same articles published in the same year—seesawed between as much as 11 […] to less than 3”.
September 21, 2016 at 3:37 pm
It’s not my argument Mike – it’s an argument that has been made repeatedly by taxonomists (mostly working on extant groups where the taxonomy crisis is greatest, and taxonomists are most urgently needed) as a way that we might reward and incentivise taxonomic work.
September 21, 2016 at 3:46 pm
Sure, Richard, I recgonise that it’s not a new argument that you’re making for the first time: I meant “your argument” in the sense of “the argument that you are bringing to this discussion”.
My question remains: if we accept the idea that we should give citations to taxonomists every time we mention an organism that they named, where does it end? Should we give citations to Hennig every time we do a phylogenetic analysis? Or to Jeff Wilson every time we use the name of a vertebral lamina? Or to Darwin every time we mention evolution? To me, all of these have the distinctive and unwholesome whiff of citation-gaming; and I am not sure that the taxonomic case is very different.
September 21, 2016 at 6:10 pm
Citation-counting is already a game.
Bad papers can get cited a lot of times just because they’re bad. Good papers may (but do not always) get under-cited because their conclusions get accepted as the new status quo so rapidly.
If in one of my discussion sections I need to reach for an example to illustrate a particular point, I’m more likely to cite Mike, Darren, Pat O’Connor, or Jeff Wilson than anyone else who has published an equally good instance of the thing I’m talking about, just because I’m most familiar with their work. Or I may cite someone I know that is up-and-coming because I want to direct a little light onto their work. Are those things citation-gaming?
The whole idea of citation-gaming implies that there is a non-broken, non-gamey way to use citation counts, which seems to me to be obviously false.
So if in a world that is so short-sighted that it is allowing taxonomy to die for stupid reasons, we can prop up this ailing discipline by using the broken logic of the oppressors against them, then I say game on.
September 22, 2016 at 7:22 am
I don’t see that.
I’m certainly not aware of having games any of my own citations.
September 23, 2016 at 4:04 pm
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August 19, 2020 at 2:06 am
It’s years late, but I do think taxonomic authorities should always be given at first mention of a taxa, for the same reasons Panagrellus states. In my work I have definitely come across situations where I needed to figure out which version of a taxa the author was referring too (yes I use both old papers and foreign language papers often, no I do not think that scientific papers have a use by date), and the authority is usually the only way. Perhaps you field is less prone to revision, then say, a fossil seed taxa, but we can neither predict future revisions nor have an objective way to decide which group is more ‘in-need’ of providing this information.
In this age online databases etc, it is not nearly so much of a burden as made out to find and include this detail. A small bit of effort can save the value of your work many years down the line when we learn things about taxa we can’t imagine now.
August 19, 2020 at 8:43 am
Tams, I find this argument oddly compelling–and I wasn’t expecting to. Originally I thought it was silly to be forced to give taxonomic authorities, and the only journal I ever published in that had that policy was PaleoBios. But now I think (a) it’s really not that much work, as you say, and (b) it could be useful down the line. As, er, you also say. Which means that in a very roundabout away, all I have managed to say is that I agree with you.