“Look at all the things you’ve done for me
Opened up my eyes,
Taught me how to see,
Notice every tree.”

So sings Dot in Move On, the climactic number of Stephen Sondheim’s Pulitzer Prize-winning music Sunday in the Park with George, which on the surface is about the post-impressionist painter Georges Seurat, but turns out to be a study of obsession and creativity.

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Un dimanche après-midi à l’Île de la Grande Jatte – 1884 [A Sunday Afternoon on the Island of La Grande Jatte – 1884]

“Taught me how to see”? What kind of talk is that? One the surface, it seems silly — we all know how to see. We do it constantly, without thinking. Yet it’s something that artists talk about all the time. And anyone who’s sat down and seriously tried to paint or draw something will have some understanding of what the phrase means. We have such strong implicit ideas of what things look like that we tend to reproduce what we “know” is there rather than what’s actually there. Like I said, we see without thinking.

In fact, the psychology of perception is complicated and sophisticated, and the brain does an extraordinary amount of filtering of the visual signals we get, to save us the bother of having to consciously process way too much data. This is a whole scientific field of its own, and I’m going to avoid saying very much about it for fear of making a fool of myself — as scientists so often do when wandering outside their own field. But I think it’s fair to say that we all have a tendency to see what we expect to see.

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Phylogeny of Sauropoda, strict consensus of most parsimonious trees according to Wilson (2002:fig. 13a)

In the case of sauropods, this tendency has meant that we’ve all been startlingly bad at seeing pneumaticity in the caudal vertebrae of sauropods. Because the literature has trained us to assume it’s not there. For example, in the two competing sauropod phylogenies that dominated the 2000s, both Wilson (2002) and Upchurch et al. (2004) scored caudal pneumaticity as very rare: Wilson’s character 119, “Anterior caudal centra, pneumatopores (pleurocoels)”, was scored 1 only for Diplodocus and Barosaurus; and  Upchurch et al. (2004:286) wrote that “A few taxa (Barosaurus, Diplodocus, and Neuquensaurus) have pleurocoel-like openings in the lateral surfaces of the cranial [caudal] centra that lead into complex internal chambers”. That’s all.

And that’s part of the reason that every year since World War II, a million people have walked right past the awesome mounted brachiosaur in the Museum Für Naturkunde Berlin without noticing that it has pneumatic caudals. After all, we all knew that brachiosaur caudals were apneumatic.

But in my 2005 Progressive Palaeontology talk about upper limits on the mass of land animals estimated through the articular area of limb-bone cartilage, I included this slide that shows how much bigger the acetabulum of Giraffatitan is than the femoral head that it houses:

Screenshot from 2014-01-24 17:30:30

And looking at that picture made me wonder: those dark areas on the sides of the first few caudals (other than the first, which is a very obvious plaster model) certainly look pneumatic.

Then a few years later, I was invited to give a talk at the Museum Für Naturkunde Berlin itself, on the subject “Brachiosaurus brancai is not Brachiosaurus“. (This of course was drawn from the work that became my subsequent paper on that subject, Taylor 2009) And as I was going through my photos to prepare the slides of that talk, I thought to myself: darn it, yes, it does have pneumatic caudals!

So I threw this slide into the talk, just in passing:

Screenshot from 2014-01-24 17:32:06

Those photos were pretty persuasive; and a closer examination of the specimen on that same trip was to prove conclusive.

Meanwhile …

Earlier in 2009, I’d been in Providence, Rhode Island, with my Index Data colleagues. I’d managed to carve a day out of the schedule to hope along the coast to the Yale Peabody Museum in New Haven, Connecticut. My main goal was to examine the cervicals of the mounted Apatosaurus (= “Brontosaurus“) excelsus holotype (although it was also on that same trip that I first saw the Barosaurus holotype material that we’ve subsequently published a preprint on).

The Brontosaurus cervicals turned out to be useless, being completely encased in plaster “improvements” so that you can’t tell what’s real and what’s not. hopefully one day they’ll get the funding they want to take that baby down off its scaffold and re-prep the material.

But since I had the privilege of spending quality time with such an iconic specimen, it would have been churlish not to look at the rest of it. And lo and behold, what did I see when I looked at the tail but more pneumaticity that we thought we knew wasn’t there!

Wedel and Taylor (2013b: Figure 10).

An isolated pneumatic fossa is present on the right side of caudal vertebra 13 in Apatosaurus excelsus holotype YPM 1980. The front of the vertebra and the fossa are reconstructed, but enough of the original fossil is visible to show that the feature is genuine. (Wedel and Taylor 2013b: Figure 10).

What does this mean? Do other Giraffatitan and Apatosaurus specimens have pneumatic tails? How pervasive is the pneumaticity? What are the palaeobiological implications?

Stay tuned! All will be revealed in Matt’s next post (or, if you can’t wait, in our recent PLOS ONE paper, Wedel and Taylor 2013b)!

References

A few bits and pieces about the PLOS Collection on sauropod gigantism that launched yesterday.

2013-10-29-SauropodEbook1-thumb

First, there’s a nice write-up of one of our papers (Wedel and Taylor 2013b on pneumaticity in sauropod tails) in the Huffington Post today. It’s the work of PLOS blogger Brad Balukjian, a former student of Matt’s from Berkeley days. The introduction added by the PLOS blogs manager is one of those where you keep wanting to interrupt, “Well, actually it’s not quite like that …” but the post itself, once it kicks in, is good. Go read it.

Brad also has a guest-post on Discover magazine’s Crux blog: How Brachiosaurus (and Brethren) Became So Gigantic. He gives an overview of the sauropod gigantism collection as a whole. Well worth a read to get your bearings on the issue of sauropod gigantism in general, and the new collection in particular.

PLOS’s own community blog EveryONE also has its own brief introduction to the collection.

And PLOS and PeerJ editor Andy Farke, recently in these pages because of his sensational juvenile Parasaurolophus paper, contributes his own overview of the collection, How Big? How Tall? And…How Did It Happen?

Finally, if you’re at SVP, go and pick up your free copy of the collection. Matt was somehow under the impression that the PLOS USB drives with the sauropod gigantism collection would be distributed with the conference packet when people registered. In fact, people have to go by the PLOS table in the exhibitor area (booth 4 in the San Diego ballroom) to pick them up. There are plenty of them, but apparently a lot of people don’t know that they can get them.

References

This is an exciting day: the new PLOS Collection on sauropod gigantism is published to coincide with the start of this year’s SVP meeting! Like all PLOS papers, the contents are free to the world: free to read and to re-use. (What is a Collection? It’s like an edited volume, but free online instead of printed on paper.)

There are fourteen papers in the new Collection, encompassing neck posture (yay!), nutrition (finally putting to bed the Nourishing Vomit Of Eucamerotus hypothesis), locomotion, physiology and evolutionary ecology. Lots for every sauropod-lover to enjoy.

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Taylor and Wedel (2013c: Figure 12). CT slices from fifth cervical vertebrae of Sauroposeidon. X-ray scout image and three posterior-view CT slices through the C5/C6 intervertebral joint in Sauroposeidon OMNH 53062. In the bottom half of figure, structures from C6 are traced in red and those from C5 are traced in blue. Note that the condyle of C6 is centered in the cotyle of C5 and that the right zygapophyses are in articulation.

Matt and I are particularly excited that we have two papers in this collection: Taylor and Wedel (2013c) on intervertebral cartilage in necks, and Wedel and Taylor (2013b) on pneumaticity in the tails of (particularly) Giraffatitan and Apatosaurus. So we have both ends of the animal covered. It also represents a long-overdue notch on our bed-post: for all our pro-PLOS rhetoric, this is the first time either of has had a paper published in a PLOS journal.

Wedel and Taylor (2013b: Figure 4). Giraffatitan brancai tail MB.R.5000 (‘Fund no’) in right lateral view. Dark blue vertebrae have pneumatic fossae on both sides, light blue vertebrae have pneumatic fossae only on the right side, and white vertebrae have no pneumatic fossae on either side. The first caudal vertebra (hatched) was not recovered and is reconstructed in plaster.

It’s a bit of a statistical anomaly that after a decade of collaboration in which there was never a Taylor & Wedel or Wedel & Taylor paper, suddenly we have five of them out in a single year (including the Barosaurus preprint, which we expect to eventually wind up as Taylor and Wedel 2014). Sorry about the alphabet soup.

Since Matt is away at SVP this week, I’ll be blogging mostly about the Taylor and Wedel paper this week. When Matt returns to civilian life, the stage should be clear for him to blog about pneumatic caudals.

Happy days!

References

Here is Tataouinea, named by Fanti et al. (2013) last week — the first sauropod to be named after a locality from Star Wars (though, sadly, that is accidental — the etymology refers to the Tataouine Governatorate of Tunisia).

FantiEtAl2013-tataouinea-fig3

Fanti et al. (2013: figure 3) T. hannibalis selected elements and reconstruction. (a) Sacral neural arches 1-3, right lateral view; (b) sacral neural spine 4, right lateral view; (c) sacral neural spine 5, right lateral view; (d) caudal vertebra 2 and fragment of caudal 1 postzygapophyses, left lateral view; (e) caudal vertebra 1, left lateral view; (f) sacral centrum 1, ventral view; (g) sacral centra 2-5, ventral view; (hj) caudal vertebra 3, anterior (h), left lateral (i), posterior (j) views; (k) left ilium, lateral view; (l) right ischium, medial view; and (m) skeletal reconstruction of T. hannibalis. Missing elements based on other nigersaurines. Scale bar: 10 cm (a-l), 1 m (m). a, acetabulum; f, fossa; hr, hyposphenal ridge; ip, ischial peduncle; ll, lateral lamina; pf, pneumatic foramen; pl, pleurocoel; poz, postzygapophysis; pp, pubic peduncle; psdf, prezygospinodiapophyseal foramen; sdl, spinodiapophyseal lamina; spol, spinopostzygapophyseal lamina; spzl, spinoprezygapophyseal lamina; sr, sacral rib; tp, transverse process. The asterisk indicates the fossa bounded by the spzl and the sdl.

No doubt Matt willl have much more to say about this animal, and especially its pneumatic features. I just thought it was time for a picture-of-the-week post.

UPDATE: Matt here, just a few quick thoughts (I’m in the middle of my summer anatomy lectures so they will be less extensive than this animal deserves). First, it’s awesome to see so much pneumaticity, and in elements that have not previously been reported as pneumatic in sauropods. The authors make a good case that we’re looking at actual pneumaticity here, for example in the pelvic elements, and not something else. So that’s cool.

What’s even cooler is that we’re seeing this in a diplodocoid:  Tataouinea is a rebbachisaurid. We’ve seen extreme pneumaticity in saltasaurines, and now we’ve got a parallel evolution of this character complex in diplodocoids. That’s cool by itself, and it’s further evidence that the underlying generating mechanism–the air sacs and their diverticula–were all in place long before they started leaving traces on the skeleton. The case for a birdlike lung-air sac system in sauropods, in saurischians, and in ornithodirans generally only keeps getting stronger. That is, we’re seeing more evidence not just that air sacs were there, but that they were bird-like in their layout, e.g., pneumatization of the pectoral girdle by clavicular air sacs, in both saltasaurines and theropods (avian and otherwise), and now extensive pelvic pneumatization (i.e., going beyond what we’ve seen previously in saltasaurines) by abdominal air sacs in rebbachisaurids and theropods (and pterosaurs, can’t forget about them). Happy times.

Reference

Fanti, Federico, Andrea Cau, Mohsen Hassine and Michela Contessi. 9 July 2013. A new sauropod dinosaur from the Early Cretaceous of Tunisia with extreme avian-like pneumatization. Nature Communications 4:2080. doi:10.1038/ncomms3080

Currey Alexander 1985 fig 1

Figure 1 from Currey and Alexander (1985)

This post pulls together information on basic parameters of tubular bones from Currey & Alexander (1985), on ASP from Wedel (2005), and on calculating the densities of bones from Wedel (2009: Appendix). It’s all stuff we’ve covered at one point or another, I just wanted to have it all in one convenient place.

Definitions:

  • R = outer radius = r + t
  • r = inner radius = R – t
  • t = bone wall thickness = R – r

Cross-sectional properties of tubular bones are commonly expressed in R/t or K (so that r = KR). K is defined as the inner radius divided by the outer radius (r/R). For bones with elliptical or irregular cross-sections, it’s best to measure two radii at right angles to each other, or use a different measure of cross-sectional geometry (like second moment of area, which I’m not getting into here).

R/t and K can be converted like so:

  • R/t = 1/(1-K)
  • K = 1 – (1/(R/t))

ASP (air space proportion) and MSP (marrow space proportion) measure the cross-sectional area of an element not taken up by bone tissue. ASP and MSP are the same measurement–the amount of non-bone space in a bony element divided by the total–we just use ASP for air-filled bones and MSP for marrow-filled bones. See Tutorial 6 and these posts: one, two, three.

For tubular bones, ASP (or MSP) can be calculated from K:

  • ASP = πr^2/πR^2 = r^2/R^2 = (r/R)^2 = K^2

Obviously R/t and K don’t work for bones like vertebrae that depart significantly from a tubular shape. But if you had a vertebra or other irregular bone with a given ASP and you wanted to see what the equivalent tubular bone would look like, you could take the square root of ASP to get K and then use that to draw out the cross-section of that hypothetical tubular bone.

To estimate the density of an element (at least near the point of a given cross-section), multiply the proportional areas of bone and air, or bone and marrow, by the specific gravities of those materials. According to Currey and Alexader (1985: 455), the specific gravities of fatty marrow and bone tissue are 0.93 and 2.1, respectively.

For a marrow-filled bone, the density of the element (or at least of the part of the shaft the section goes through) is:

  • 0.93MSP + 2.1(1-MSP)

Air is matter and therefore has mass and density, but it is so light (0.0012-0.0013 g/mL) that we can effectively ignore it in these calculations. So the density of a pneumatic element is: 2.1(1-ASP) For the three examples in the figure at the top of the post, the ASP/MSP values and densities are:

  • (b) alligator femur (marrow-filled), K = 0.35, MSP = K^2 = 0.12, density = (0.93 x 0.12) + (2.1 x 0.88) = 1.96 g/mL
  • (c) camel tibia (marrow-filled), K = 0.57, MSP = K^2 = 0.32, density = (0.93 x 0.32) + (2.1 x 0.68) = 1.73 g/mL
  • (d) Pteranodon first phalanx (air-filled), K = 0.91, ASP = K^2 = 0.83, density = (2.1 x 0.17) = 0.36 g/mL

What if we switched things up, and imagined that the alligator and camel bones were pneumatic and the Pteranodon phalanx was marrow-filled? The results would then be:

  • (b) alligator femur (hypothetical air-filled), K = 0.35, ASP = K^2 = 0.12, density = (2.1 x 0.88) = 1.85 g/mL
  • (c) camel tibia (hypothetical air-filled), K = 0.57, ASP = K^2 = 0.32, density = (2.1 x 0.68) = 1.43 g/mL
  • (d) Pteranodon first phalanx (hypothetical marrow-filled), K = 0.91, MSP = K^2 = 0.83, density = (0.93 x 0.83) + (2.1 x 0.17) = 1.13 g/mL

In the alligator femur, the amount of non-bone space is so small that it does much matter whether that space is filled by air or marrow–replacing the marrow with air only lowers the density of the element by 5-6%. The Pteranodon phalanx is a lot less dense than the alligator femur for two reasons. First, there is much less bony tissue–the hypothetical marrow-filled phalanx is 42% less dense as the alligator femur. Second, the marrow is replaced by air, which reduces the density by an additional 40% relative to the alligator.

Next time: how to write punchier endings for tutorial posts.

References

DSCN1178

Another raw photo from the road.

The Morrison fossils from the Oklahoma panhandle were dug up and prepped out by  WPA workers in the 1930s, and their preparation toolkit consisted of hammers, chisels, pen-knives, and sandpaper. (Feel free to take a minute if you need to get your nausea under control.) And whereas most Morrison fossils are much darker than the surrounding matrix, in the Oklahoma panhandle the bone and matrix are about the same color. Sometimes the prep guys didn’t know they’d gone too deep until they sanded into the trabecular bone. Or in this case, into the air spaces in the condyle of this anterior dorsal of Apatosaurus.

Still, we have lots of anterior dorsals of Apatosaurus, and very few we can see inside, and they’re too darned big to scan, so this gives us useful information that a more perfect specimen would not. So I salute you, underemployed dude from eighty-odd years ago. Thanks for showing me something cool.

No time for anything new, so here’s a post built from parts of other, older posts.

The fourth sacral centrum of Haplocanthosaurus CM 879, in left and right lateral view. This is part of the original color version of Wedel (2009: figure 8), from this page. (Yes, I know I need to get around to posting the full-color versions of those figures. It’s on my To Do list.)

Note the big invasive fossa on the right side of the centrum. The left side is waisted (narrower at the middle than the ends) like most vertebrae of most animals, but has no distinct fossa on lateral face of the centrum. What’s up with that? Here’s an explanation from an old post (about another sauropod) that still fits:

Now, this asymmetry is also weird, but it’s expected weirdness. Pneumaticity seems to just be inherently variable, whether we’re talking about human sinuses or the facial air sacs of whales or the vertebrae of chickens. It appears that the form of pneumatic features is entirely determined by local tissue interactions, with little or no genetic control of the specific form. Think of it this way: genes prescribe certain developmental events, and those events bring tissues into contact–such as pneumatic epithelium and bone. The morphology of the bone arises out of that interaction, and each interaction of bone and pneumatic epithelium has the potential to produce something new. In this case, the diverticula on the left side of the vertebral column come from the lungs or air sacs on the left, and those on the right side come from the lungs or airs sacs on the right, so it’s really two sets of diverticula contacting the bone independently. The wonder, then, is not that pneumatic bones are so variable, but that we see any regularities at all.