January 26, 2017
It’s now been widely discussed that Jeffrey Beall’s list of predatory and questionable open-access publishers — Beall’s List for short — has suddenly and abruptly gone away. No-one really knows why, but there are rumblings that he has been hit with a legal threat that he doesn’t want to defend.
To get this out of the way: it’s always a bad thing when legal threats make information quietly disappear; to that extent, at least, Beall has my sympathy.
That said — over all, I think making Beall’s List was probably not a good thing to do in the first place, being an essentially negative approach, as opposed to DOAJ’s more constructive whitelisting approach. But under Beall’s sole stewardship it was a disaster, due to his well-known ideological opposition to all open access. So I think it’s a net win that the list is gone.
But, more than that, I would prefer that it not be replaced.
Researchers need to learn the very very basic research skills required to tell a real journal from a fake one. Giving them a blacklist or a whitelist only conceals the real issue, which is that you need those skills if you’re going to be a researcher.
Finally, and I’m sorry if this is harsh, I have very little sympathy with anyone who is caught by a predatory journal. Why would you be so stupid? How can you expect to have a future as a researcher if your critical thinking skills are that lame? Think Check Submit is all the guidance that anyone needs; and frankly much more than people really need.
Here is the only thing you need to know, in order to avoid predatory journals, whether open-access or subscription-based: if you are not already familiar with a journal — because it’s published research you respect, or colleagues who you respect have published in it or are on the editorial board — then do not submit your work to that journal.
It really is that simple.
So what should we do now Beall’s List has gone? Nothing. Don’t replace it. Just teach researchers how to do research. (And supervisors who are not doing that already are not doing their jobs.)
June 16, 2015
We stopped off at the Peggy’s Cove lighthouse on the way, and spotted a vertebrate, which I am pleased to present:
It’s a whale skull, but I have no idea what kind. Can anyone help out?
So much for vertebrates — it was really all about the inverts. Here are six of them:
I have a 2lb lobster here; my colleague Jakub went for two 1lb lobsters, as did Jason and Wolfram (not pictured). That’s Wolfram’s lobster closest to the camera, giving a better impression of just what awesome beasts these were.
Peggy’s Cove: recommended. For vertebrates and inverts.
(Thanks to Wolfram Schneider for these photos.)
May 7, 2015
This post is a response to Copyright from the lens of a lawyer (and poet), posted a couple of days ago by Elsevier’s General Counsel, Mark Seeley. Yes, I am a slave to SIWOTI syndrome. No, I shouldn’t be wasting my time responding to this. Yes, I ought to be working on that exciting new manuscript that we SV-POW!er Rangers have up and running. But but but … I can’t just let this go.
Copyright from the lens of a lawyer (and poet) is a defence of Elsevier’s practice of having copyright encumber scientific publishing. I tried to read it in the name of fairness. It didn’t go well. The very first sentence is wrong:
It is often said that copyright law is about a balance of interests and communities, creators and users, and ultimately society as a whole.
No. Copyright is not a balance between competing interests; it’s a bargain that society makes. We, the people, give up some rights in exchange for incentivising creative people to make new work, because that new work is of value to society. To quote the US constitution’s helpful clause, copyrights exist “To promote the Progress of Science and useful Arts” — not for authors, but for wider society. And certainly not of publishers who coerce authors to donate copyright!
(To be fair to Seeley, he did hedge by writing “It is often said that copyright law is about a balance”. That is technically true. It is often said; it’s just wrong.)
Well, that’s three paragraphs on the first sentence of Elsevier’s defence of copyright. I suppose I’d better move on.
The STM journal publishing sector is constantly adjusting to find the right balance between researcher needs and the journal business model, as refracted through copyright.
Wrong wrong wrong. We don’t look for a balance between researchers needs (i.e. science) and the journal business model. Journals are there to serve science. That’s what they’re for.
Then we have the quote from Mark Fischer:
I submit that society benefits when the best creative spirits can be full-time creators and not part-timers doing whatever else (other than writing, composing, painting, etc.) they have to do to pay the rent.
This may be true. But it is totally irrelevant to scholarly copyright. That should hardly need pointing out, but here it is for those hard of thinking. Scholars make no money from the copyright in the work they do, because (under the Elsevier model) they hand that copyright over to the publisher. Their living comes in the form of grants and salaries, not royalties.
Ready for the next one?
The alternatives to a copyright-based market for published works and other creative works are based on near-medieval concepts of patronage, government subsidy […]
Woah! Governments subsidising research and publication is “near-medieval”? And there we were thinking it was by far the most widespread model. Silly us. We were all near-medieval all this time.
Someone please tell me this is a joke.
Moving swiftly on …
Loud advocates for “copyright reform” suggest that the copyright industries have too much power […] My comparatively contrarian view is that this ignores the enormous creative efforts and societal benefits that arise from authoring and producing the original creative work in the first place: works that identify and enable key scientific discoveries, medical treatments, profound insights, and emotionally powerful narratives and musical experiences.
Wait, wait. Are we now saying that … uh, the only reason we get scientific discoveries and medical treatment because … er … because of copyright? Is that it? That can’t be it. Can it?
Copyright has no role in enabling this. None.
In fact, it’s worse than that. The only role of copyright in modern scholarly publishing is to prevent societal benefits arising from scientific and medical research.
The article then wanders off into an (admittedly interesting) history of Seeley’s background as a poet, and as a publisher of literary magazines. The conclusion of this section is:
Of course creators and scientists want visibility […] At the very least, they’d like to see some benefit and support from their work. Copyright law is a way of helping make that happen.
This article continues to baffle. The argument, if you want to dignify it with that name, seems to be:
- poets like copyright
- => we copyright other people’s science
- => … profit!
Well, that was incoherent. But never mind: finally we come to part of the article that makes sense:
- There is the “idea-expression” dichotomy — that copyright protects expression but not the fundamental ideas expressed in a copyright work.
This is correct, of course. That shouldn’t be cause for comment, coming from a copyright lawyer, but the point needs to be made because the last time an Elsevier lawyer blogged, she confused plagiarism with copyright violation. So in that respect, this new blog is a step forward.
But then the article takes a sudden left turn:
The question of the appropriateness of copyright, or “authors’ rights,” in the academic field, particularly with respect to research journal articles, is sometimes controversial. In a way quite similar to poets, avant-garde literary writers and, for that matter, legal scholars, research academics do not rely directly on income from their journal article publishing.
Er, wait, what? So you admit that scholarly authors do not benefit from copyright in their articles? We all agree, then, do we? Then … what was the first half of the article supposed to be about?
And in light of this, what on earth are we to make of this:
There is sometimes a simplistic “repugnance” about the core publishing concept that journal publishers request rights from authors and in return sell or license those rights to journal subscribers or article purchasers.
Seeley got that much right! (Apart from the mystifyingly snide use of “simplistic” and the inexplicable scare-quotes.) The question is why he considers this remotely surprising. Why would anyone not find such a system repugnant? (That was a rhetorical question, but here’s the answer anyway: because they make a massive profit from it. That is the only reason.)
Well, we’re into the final stretch. The last paragraph
Some of the criticism of the involvement of commercial publishing and academic research is simply prejudice, in my view;
Yes. Some of us are irrationally prejudiced against a system where, having laboriously created new knowledge, it’s then locked up behind a paywall. It’s like the irrational prejudice some coal-miners have against the idea of the coal they dig up being immediately buried again.
And finally, this:
Some members of the academic community […] base their criticism on idealism.
Isn’t that odd? I have never understood why some people consider “idealism” to be a criticism. I accept it as high praise. People who are not idealists have nothing to base their pragmatism on. They are pragmatic, sure, but to what end?
So what are we left with? What is Seeley’s article actually about? It’s very hard to pick out a coherent thread. If there is one, it seems to be this: copyright is helpful for some artists, so it follows that scholarly authors should donate their copyright to for-profit publishers. That is a consequence that, to my mind, does not follow particularly naturally from the hypothesis.
February 22, 2015
One thing that I’ve never understood is why some people are skeptical about sauropods using their tails defensively, when lizards do this all the time. I’ve been digging through the literature on this for a current project, and there are some really great accounts out there, and by ‘great’ I mean ‘scary’.
Here’s a key passage from Murphy and Mitchell (1974: p. 95):
V. salvator uses the tail to strike repeatedly in combination with biting for defense…Captive Varanus (varius, spenceri, mertensi, and salvadorii) use the tail for defense, but only salvadorii appears to aim directly for a handler’s eye. An adult male V. salvadorii accurately struck the senior author’s eye with the tip of the tail as he was attempting to maneuver the lizard. On many subsequent occasions, the monitor tried to strike the eye of the handler with accuracy.
Not being a monitor expert, I was initially thrown by the V. salvator/V. salvadorii issue. V. salvator is the water monitor, V. salvadorii is the crocodile monitor. Both get pretty darned big; Wikipedia lists 3.21 m (10.5 ft) for V. salvator and 2.44-3.23 m (8.0-10.6 ft) for V. salvadorii.
Anyway, I’d heard of lots of anecdotal reports of lizards from many clades using their tails to lash at rivals, predators, or handlers, but I’d never read about a lizard aiming directly for the target’s eyes. It immediately made me think about (1) sauropod tails, especially the whip-lash tails of flagellicaudan diplodocoids and at least some titanosaurs (Wilson et al. 1999), and (2) the supraorbital crests and ridges in many theropods, especially big Morrison forms like Allosaurus and Ceratosaurus. Of course, supraorbital crests in theropods could serve many functions, including shading the eyes and social and sexual display, but it’s interesting to speculate that they might have had a defensive function as well. Has anyone ever proposed that in print?
Most of the papers that pooh-pooh the use of whiplash tails in defense (e.g., Myhrvold and Currie 1997) argue that the tail-tip would be too small to do any serious damage to a multi-ton attacker, and too fragile to survive an impact. This seems wrong-headed to me, like arguing that unless you find putative animal weapons broken and caked in their adversaries’ blood, they aren’t used as weapons. A structure doesn’t have to do lethal damage or any damage at all to serve as a weapon, as long as it dissuades a predator from attacking. I’d think that getting hit in the eye by a 35-foot bullwhip might convince an allosaur to go have a look at Camptosaurus instead.
Now, one could argue that if the whip-lash doesn’t do any serious damage, predators will learn to blow them off as dishonest signals (we’re assuming here that having your eye possibly knocked out doesn’t count as ‘serious damage’ to an allosaur). But it’s not like the whiplash was the only weapon a diplodocid could bring to bear: the proximal tail could probably deliver a respectable clobberin’, and then there’s the zero fun of being stomped on by an adversary massing a dozen tons or more. In that sense, the whip-lash is writing checks the rest of the body can certainly cash. It’s saying, “Getting hit with this will be no fun, and if that isn’t enough, there’s plenty more coming.”
All of this is leaving aside more obvious defensive adaptations of the tail in Shunosaurus, maybe Omeisaurus and Mamenchisaurus, and probably Spinophorosaurus (although I’d feel better about Spinophorosaurus if the association of the spikes and the tail was more secure). I suspect that all sauropod tails were useful in defense, but only some sauropod taxa used that behavior enough for a morphological enhancement (club, spikes, whiplash) to have evolved. Similarly, common snapping turtles, Chelydra serpentina, will wiggle their unspecialized tongues to attract fish (I’ve witnessed this myself in captive specimens) but lack the worm-shaped tongue lure found in the more ambush-specialized alligator snappers, Macrochelys temminckii. On reflection, there are probably few morphological changes in evolution that aren’t preceded by behavior. Not in a Lamarckian sense, just that certain variations aren’t useful unless the organism is already (suboptimally) performing the relevant function.
Bonus observation: Mike noted back when that Shunosaurus and Varanus retain complex caudal vertebrae all the way out to the end. Since in this case ‘complex’ means ‘having processes that muscles can attach to’, maybe that has something to do with keeping up relatively fine motor control in your bad-guy-whomping organ. Would be interesting to compare caudal morphology between tail-whomping lizards and committed caudal pacifists (assuming we can find any of the latter that we’re certain about – maybe tail-whomping just doesn’t get used very often in some taxa, like those that have caudal autotomy). Anyone know anything about that?
- Murphy, J. B., & Mitchell, L. A. (1974). Ritualized combat behavior of the pygmy mulga monitor lizard, Varanus gilleni (Sauria: Varanidae). Herpetologica, 90-97.
- Myhrvold, N. P., & Currie, P. J. (1997). Supersonic sauropods? Tail dynamics in the diplodocids. Paleobiology, 23(4), 393-409.
- Wilson, J. A., Martinez, R. N., & Alcober, O. (1999). Distal tail segment of a titanosaur (Dinosauria: Sauropoda) from the Upper Cretaceous of Mendoza, Argentina. Journal of Vertebrate Paleontology, 19(3), 591-594.
On Monday we visited the Prehistoric Museum in Price, Utah, the Cleveland-Lloyed dinosaur quarry, and sites in the Mussentuchit member of the Cedar Mountain Formation. Many thanks to Marc Jones for the photos.
In 2010, the College of Eastern Utah became Utah State University – Eastern, and the CEU Prehistoric Museum in Price is now officially the USU Eastern Prehistoric Museum. The dinosaurs in the center of exhibit hall are being remounted. These include Allosaurus, Stegosaurus, Camptosaurus (mounted, toward top of photo), and Camarasaurus (dismounted, on floor). Most of the mounts are either real material or casts of real material from the nearby Cleveland-Lloyd quarry.
The museum has many other exhibits besides the one shown above. The paleo wing alone covers two floors, and upstairs there are great displays on Cretaceous dinosaurs from the area, including Jurassic and Cretaceous ankylosaurs, a ceratopsian, and numerous tracks.
After leaving Price we went to the Cleveland-Lloyd dinosaur quarry, which has produced over 20,000 separate elements, including the remains of something like 50-60 allosaurs. The smallest ones are hatchlings–several elements from literally cat-sized baby allosaurs are known from the quarry.
Mark Loewen (right) talked to us about how the quarry might have formed, and what it’s like to work there. On the left in the above photo you can see a bunch of disarticulated Allosaurus bones suspended above the floor on wires. These are placed to give an idea of the three-dimensional jumbling of the bones in the matrix. It is almost impossible to jacket one bone or even several without hitting others. I remember how that goes from working at the OMNH sauropod bonebed in the Cloverly–it’s almost impossible to avoid blowing through some bones just to get others out of the ground.
Here’s one of a handful of bones from the quarry with bite marks. This is the pelvis of a Camarasaurus, lying upside down, anterior toward the wall. The back end of the right ilium is heavily tooth-marked.
After Cleveland-Lloyd we stopped at a couple of sites in the Mussentuchit. I’m not going to blog about those because they are active sites that are still producing fossils. Unfortunately it is not uncommon for fossil localities on public land to be looted and vandalized by unscrupulous private collectors. I don’t want to give those a-holes any help, so I’ve deliberately not shown any photos of about half a dozen of the most interesting sites that we visited during the conference. It sucks to know cool things and not be able to tell people about them, but if I blab then I put those cool things at risk. Happily there is a lot of active research going on, including one or two projects that got hatched at this conference, so hopefully I will be able to tell some of these stories soon.
Instead, I will close this series (for now) with a shout-out to the people who convened and ran the field conference: Jim Kirkland (left) and ReBecca Hunt-Foster (middle). John Foster (right) also contributed a lot of time, energy, effort, and expertise.
Jim Kirkland is amazing. If you know him, you know that his heart is as big and outgoing as his booming voice. His knowledge of and enthusiasm for the mid-Mesozoic sites in western Colorado and eastern Utah have driven a lot of science over the past quarter century, and he shared that knowledge and enthusiasm compulsively on this trip. My head is so full of new stuff, it’s honestly hard to think. I wish I had a solid week to just digest everything I learned at the conference.
My highest praise and thanks go to ReBecca. Thanks to her hard work and organization, the whole field conference ran about as much like clockwork as something this complicated can–and when it didn’t run smoothly, like that flat tire on Saturday, she took charge and got us back on track. She was basically den mom to about 60 folks, from teenagers to retirees, from at least ten countries and four continents, and somehow she did it all with unflagging grace and good humor. The fact that she had her appendix out just two or three days before the start of the conference only cements my admiration for what she pulled off here.
I had a fantastic time. I hope they do another one.
Actually we had the Jurassic talks today, but I can’t show you any of the slides*, so instead you’re getting some brief, sauropod-centric highlighs from the museum.
* I had originally written that the technical content of the talks is embargoed, but that’s not true–as ReBecca Hunt-Foster pointed out in a comment, the conference guidebook with all of the abstracts is freely available online here.
Like this Camarasaurus that greets visitors at the entrance.
And this Apatosaurus
ilium ischium with bite marks on the distal end, indicating that a big Morrison theropod literally ate the butt of this dead apatosaur. Gnaw, dude, just gnaw.
And the shrine to Elmer S. Riggs.
One of Elmer’s field assistants apparently napping next to the humerus of the Brachiosaurus alithorax holotype. This may be the earliest photographic evidence of someone “pulling a Jensen“.
Here’s the reconstructed forelimb of B. altithorax, with Cary Woodruff and me for scale. The humerus and coracoid (and maybe the sternal?) are cast from the B.a. holotype, the rest of the bits are either sculpted or filled in from Giraffatitan. The scap is very obviously Giraffatitan.
Cary took this photo of me playing with a
fiberglass 100% original bone Apatosaurus femur upstairs in the museum office, and he totally passed up the opportunity to push me down the stairs afterward. I kid, I kid–actually Cary and I get along just fine. It’s no secret that we disagree about some things, but we do so respectfully. Each of us expects to be vindicated by better data in the future, but there’s no reason we can’t hang out and jaw about sauropods in the meantime.
Finally, in the museum gift shop (which is quite lovely), I found this:
You had one job, Nova. ONE JOB!
So, this is a grossly inadequate post that barely scratches the surface of the flarkjillion or so cool exhibits at the museum. I only got about halfway through the sauropods, fer cryin’ out loud. If you ever get a chance to come, do it–you won’t be disappointed.
February 3, 2014
From the files of J. K. Rowling.
Dear Ms. Rowling,
Thank you for submitting your manuscript Harry Potter and the Half-Blood Prince. We will be happy to consider it for publication. However we have some concerns about the excessive length of this manuscript. We usually handle works of 5-20 pages, sometimes as much as 30 pages. Your 1337-page manuscript exceeds these limits, and requires some trimming.
We suggest that this rather wide-ranging work could usefully be split into a number of smaller, more tightly focussed, papers. In particular, we feel that the “magic” theme is not appropriate for our venue, and should be excised from the current submission.
Assuming you are happy to make these changes, we will be pleased to work with you on this project.
Esteemed Joenne Kay Rowling,
We are delightful to recieve your manuscript Harry Potter and the Half-Blood Prince and we look forword to publish it in our highly prestigious International Journal of Story Peer Reviewed which in 2013 is awarded an impact factor of 0.024.
Before we can progression this mutually benefit work, we require you to send a cheque for $5,000 US Dollars to the above address.
Dear J.R.R. Rowling,
We are in receipt of your manuscript Harry Potter and the Half-Blood Prince. Unfortunately, after a discussion with the editorial board, we concluded that it is insufficiently novel to warrant publication in our journal, which is one of the leading venues in its field. Although your work is well executed, it does not represent a significant advance in scholarship.
That is not to say that minor studies such as yours are of no value, however! Have you considered one of the smaller society journals?
Dear Dr. Rowling
Your submission Harry Potter and the Half-Blood Prince has passed initial editorial checks and will now be sent to two peer-reviewers. We will contact you when we have their reports and are able to make a decision.
Dear Dr. Rowling
Re: Harry Potter and the Half-Blood Prince.
We agree that eighteen months is too long for a manuscript to spend in review. On making inquiries, we find that we are unfortunately no longer able to contact the editor who was handling your submission.
We have appointed a new handling editor, who will send your submission to two new reviewers. We will contact you as soon as the new editor has made a decision.
Dear Dr. Rowling
Re: Harry Potter and the Half-Blood Prince.
Your complaint is quite justified. We will chase the reviewers.
Dear Dr. Rowling
I am pleased to say that the reviewers have returned their reports on your submission Harry Potter and the Half-Blood Prince and we are able to make an editiorial decision, which is ACCEPT WITH MAJOR REVISION.
Reviewer 1 felt that the core point of your contribution could be made much more succinctly, and recommended that you remove the characters of Ron, Hermione, Draco, Hagrid and Snape. I concur with his assessment that the final version will be tighter and stronger for these cuts, and am confident that you can make them in a way that does not compromise the plot.
Reviewer 2 was positive over all, but did not like being surprised by the ending, and felt that it should have been outlined in the abstract. She also felt that citation of earlier works including Lewis (1950, 1951, 1952, 1953, 1954, 1955, 1956) and Pullman (1995, 1997, 2000) would be appropriate, and noted an over-use of constructions such as “… said Hermione, warningly”.
Dear Dr. Rowling
Thank you for your revised manuscript of Harry Potter and the Half-Blood Prince, which it is our pleasure to accept. We now ask you to sign the attached copyright transfer form, so we can proceed with publication.
Dear Dr. Rowling
I am sorry that you are unhappy about this, but transfer of copyright is our standard procedure, and we must insist on it as a prerequisite for publication. None of our other authors have complained.
Dear Dr. Rowling
Thank you for the signed copyright transfer form.
In answer to your query, no, we do not pay royalties.
Dear Dr. Rowling
Sadly, no, we are unable to make an exception in the matter of royalties.
Dear Dr. Rowling
Your book has now been formatted. We attach a proof PDF. Please read this very carefully as this is the last chance to spot errors.
You will readily appreciate that publishing is an expensive business. In order to remain competitive we have had to reduce costs, and as a result we are no longer able to offer proof-reading or copy-editing. Therefore you are responsible for ensuring the copy is clean.
At this stage, changes should be kept as small as possible, otherwise a charge may be incurred for re-typesetting.
Dear Dr. Rowling
Many thanks for returning the corrected proofs of Harry Potter and the Half-Blood Prince. We will proceed with publication.
Now that the final length of your contribution is known, we are able to assess page charges. At 607 pages, this work exceeds our standard twenty free pages by 587. At $140 US per page, this comes to $82,180. We would be grateful if you would forward us a cheque for this amount at your convenience.
Dear Dr. Rowling
Thank you for you prompt payment of the page charges. We agree that these are regrettable, but sadly they are part of the reality of the publishing business.
We are delighted to inform you that Harry Potter and the Half-Blood Prince is now published online, and has been assigned the DOI 10.123.45678.
We thank you for working on this fine contribution with us, and hope you will consider us for your future publications.
Dear Dr. Rowling
You are correct, your book is not freely downloadable. As we explained earlier in this correspondence, publishing is an expensive business. We recover our substantial costs by means of subscriptions and paid downloads.
In our experience, those with the most need to read your book will probably have institutional access. As for those who do not: if your readers are as keen as you say, they will no doubt find the customary download fee of $37.95 more than reasonable. Alternatively, readers can rent online access at the convenient price of $9.95 per 24 hours.
Dear Dr. Rowling
I am sorry that you feel the need to take that tone. I must reiterate, as already stated, that the revenues from download charges are not sufficient for us to be able to pay royalties. The $37.95 goes to cover our own costs.
If you wish for your book to be available as “open access”, then you may take advantage of our Freedom Through Slavery option. This will attract a further charge of $3,000, which can be paid by cheque as previously.
Your attitude is really quite difficult to understand. All of this was quite clearly set out on our web-site, and should have been understood by you before you made your submission.
As stated in the copyright transfer form that you signed, you do not retain the right to post freely downloadable copies of your work, since you are no longer the copyright holder.
We must ask you not to contact your handling editor directly. He was quite shaken by your latest outburst. If you feel you must write to us again, we must ask you to moderate your language, which is quite unsuitable for a lady. Meanwhile, we remind you that our publishing agreement follows industry best practice. It’s too late to complain about it now.
IP Lawyer #1
Dear Pyramid Web-Hosting,
We write on behalf of our client, Ancient Monolith Scholarly Publishing, who we assert are the copyright holders of Harry Potter and the Half-Blood Prince. It has come to our attention that a copy of this copyrighted work has been posted on a site hosted by you at the URL below.
This letter is official notification under the provisions of Section 512(c) of the Digital Millennium Copyright Act (“DMCA”) to effect removal of the above-reported infringement. We request that you immediately issue a cancellation message as specified in RFC 1036 for the specified posting and prevent the infringer, Ms. J. K. Rowling, from posting the infringing material to your servers in the future. Please be advised that law requires you, as a service provider, to “expeditiously remove or disable access to” the infringing material upon receiving this notice. Noncompliance may result in a loss of immunity for liability under the DMCA.
Please send us at the address above a prompt response indicating the actions you have taken to resolve this matter.
Examination of Ms. Rowling’s personal effects established that she had written most of a seventh book, Harry Potter and the Deathly Hallows. However, Rowling never sought to publish this final book in the series.