The keys to success: fear, arrogance, and laziness
January 22, 2020
A student wrote to me to ask where I got the motivation to prep my anatomy lectures. Here’s what I sent back.
I’ll be honest, for me it is partly fear, partly arrogance, and partly laziness:
- Fear of going up in front of 270 smart folks with the internet at their fingertips and not bringing my A game.
- The arrogance to think that I am pretty good at this, and the desire to show off a little by doing it well.
- Laziness because the more I put into the slideshow now, the less work I’ll have to do in the future. I prefer to have the lecture be so self-explanatory that I don’t really need to prep for it (even though I will), I could just go up to the podium and riff off the slides and not worry that I’m going to forget something crucial. Anything crucial goes into the slideshow for me, so even if I draw a blank, the slides will remind me of all the points I want to make.
Related: it’s faster to take 5 minutes right after a lecture and fix the problems with it, than it is to come back in 10 months and spend an hour trying to figure out what I wanted to fix and probably still forgetting half of it. If it’s a choice between doing a little work now and a lot later, I usually go for the first option.
What works for you?
Pro tip: turn your talks into photo books
August 21, 2019
First, a short personal backstory. Vicki’s and my extended families both live mostly in Oklahoma and Kansas, so they only get to see our son, London, at the holidays or at infrequent mid-year visits. Starting when London was five, every year I’ve made a photo book of his adventures through the year to give as Christmas presents to all of our relatives. These have also become cherished mementos for the three of us here in Cali. The service I use is Shutterfly, and they have yet to mis-print a book or screw up an order over the space of a decade. So I feel confident recommending them.
About 3-4 times a year I get an offer from Shutterfly for a free 8×8 hardcover photo book, usually like 20 to 26 pages unless I want to pay a little extra. Sometimes if I’ve just taken a vacation or have some other batch of good photos, I’ll burn the free photo book capturing that, but most of time I use the freebies to memorialize my talks. Here are two I had to hand in my office when I got the idea for this post. On the left is my 2014 SVPCA talk on supramedullary airways in birds and dinos, and on the right is Jessie Atterholt’s talk from last year’s SVPCA on the same topic (with loads more data).
The 2014 talk was the first one I turned into a book, and I put it together right after the conference when the logic and cadence of the talk was still in my mind. My talks tend to be very text-light, and the slides basically act as memory triggers for me to riff on at the podium. So for that book I deliberately tried to capture the essence of what I said about each slide, hoping that it would make it easier to write the paper when the time came (and the time is, er, now, since Jessie has written the first draft already).
I also tend to use a lot of slides compared to most other folks, so I doubled up the slides on each page to fit the talk into the confines of a free book. For the recent Haplocanthosaurus presentation at the 1st Palaeontological Virtual Congress (available here), I put a lot of text on the slides to make them self-explanatory, and used fewer slides. So when I made that talk into a book, I just made each slide a full page, with no captions.
You know who appreciates these things? Anyone who wants to hear about your work, but doesn’t want to sit through a 15-minute slide presentation. It’s so much more natural and inviting to hand someone a book and say, “Here’s my talk, feel free to look through it or borrow it for a few days”. It’s like taking some 8×11 printouts of your poster to a conference: making born-digital presentations into physical artifacts may feel old-fashioned, but those artifacts are amazingly useful when you’re talking with other primates in meatspace.
You know who else appreciates these things? Coauthors who couldn’t be at the conference. So occasionally if I have a free book to burn, I’ll make an extra copy of one I already have incarnate, and send it to a coauthor as a gift.
So I recommend doing this. I don’t know how much stuff you have to order from Shutterfly to get free book offers now and then (maybe not very much since they do make some back on shipping), but I know how much your first book will cost if you’re not a Shutterfly user: nothing. The first five new users who use the link below will get a free 8×8 photo book. I’ll get one, too, for bringing people on board, but it’s not a cult, you can leave anytime. I wouldn’t, though, this stuff is too useful.
Here’s that link: https://invite-shutterfly.com/x/DvuNbO
Introducing The One Repo
June 30, 2015
You know what’s wrong with scholarly publishing?
Wait, scrub that question. We’ll be here all day. Let me jump straight to the chase and tell you the specific problem with scholarly publishing that I’m thinking of.
There’s nowhere to go to find all open-access papers, to download their metadata, to access it via an open API, to find out what’s new, to act as a platform for the development of new tools. Yes, there’s PubMed Central, but that’s only for work funded by the NIH. Yes, there’s Google Scholar, but that has no API, and at any moment could go the way of Google Wave and Google Reader when Google loses interest.
Instead, we have something like 4000 repositories out there, balkanised by institution, by geographical region, and by subject area. They have different UIs, different underlying data models, different APIs (if any). They’re built on different software platforms. It’s a jungle out there!
As researchers, we don’t need 4000 repos. You know what we need? One Repo.
Hey! That would be a good name for a project!
I’ve mentioned before how awesome and pro-open my employers, Index Data, are. (For those who are not regular readers, I’m a palaeontologist only in my spare time. By day, I’m a software engineer.) Now we’re working on an index of green/gold OA publishing. Metadata of every article across every repository and publisher. We want it to be complete, in the sense that we will be going aggressively for the long tail as opposed to focusing on some region or speciality, or things that are easily harvestable by OAI-PMH or other standards. We want it to be of a high, consistent quality in terms of metadata. We want it to be up to date. And most importantly, we want it to be fully open for all and any kind of re-use, by any other actor. This will include downloadable data files, OAI-PMH access, search-retrieve web services, embeddable widgets and more. We also envisage a Linked Data representation with a CRUD interface that allows third parties to contribute supplemental information, entity reconciliation, tagging, etc.
Instead of 4000 fragments, one big, meaty chunk of data.
Because we at Index Data have spent the last ten years helping aggregators and publishers and others getting access to difficult-to-access information through all kinds of crazy mechanisms, we have a unique combination of the skills, the tools, and the desire to pursue this venture.
So The One Repo is born. At the noment, we have:
- Harvesting set up for an initial set of 20 repositories.
- A demonstrator of one possible UI.
- A whitepaper describing the motivation and some of the technical aspects.
- A blog about the project’s progress.
- An advisory board of some of the brightest, most experienced and wisest people in the world of open access.
We’ve been flying under the radar for the last month and a bit. Now we’re ready for the world to know what we’re up to.
The One Repo is go!
Welcome, Cracked readers–here’s some eyeball bait
March 9, 2014
Although it would be nice to think that our site views have octupled in the last day because of Mike’s fine and funny posts about what search terms bring people to SV-POW!, the real reason is that we were blessed by incoming links from both pages of this Cracked.com article.
Now, as any person who has ever accomplished anything whatsoever knows, it is super-important to avoid Cracked.com or you’ll still be up 23 hours from now reading, “6 Mind-Blowing Ways that Comedy Writers are Secretly Destroying Your Productivity”. (I’m kidding, that article doesn’t really exist–but if it did, I’m sure it would consist entirely of descriptions and links to six other Cracked articles). But that’s only true because most of the articles there hit the sweet spot at the intersection of funny, surprisingly informative, mercifully short, and well-written. Crack.com would be a more honest URL, but I assume it was taken.
Anyway, I’d like to return the favor, so here’s a list of the 6 SV-POW! Posts Most Likely to Blow the Minds of Cracked.com Readers. If I missed some goodies or recommended some stinkers, let me know–the comment thread is open.
1.How big was Amphicoelias fragillimus? I mean, really?
Who doesn’t want to read about the bizarre real-world mystery surrounding what might have been the world’s largest dinosaur? If you’re not sold, consider that the picture above shows a single vertebra that was–or at least might have been–seven and a half feet tall.
2. Oblivious sauropods being eaten
The mercifully short version of this much longer post, in which I consider the consequences of the world’s largest animals having the world’s longest cells.
Weapons-grade anatomical pedantry.
4. CONFIRMED: the Umbaran Starfighter is an Apatosaurus cervical
Yes, there is a ship in Star Wars: The Clone Wars that is basically a flying dinosaur vertebra. It took us about five weeks to unravel that story–the post linked above has links to the rest of the saga.
5. SV-POW! showdown: sauropods vs whales
Our original linkbait post. Don’t miss the shorter follow-up with more critters.
6. Friday phalanges: Megaraptor vs Saurophaganax
A deliberately goofy post in which I wax poetic about the largest predatory dinosaur claws ever discovered.
So, that was a big pile of superlatives and Star Wars. If you’re hungry for more substantial fare, you might start with our Tutorials page or our Things to Make and Do series on dissecting and skeletonizing modern animals. We also blog a lot about the evils of obstructive publishers and the need for open access to the scientific literature–you can find those posts on our Shiny Digital Future page.
A parting shot in my desperate quest for attention: this Star Wars ship flying around in the background in Firefly and Serenity is at least partly my fault–full story here. Oh, and my co-blogger Mike Taylor has written an insightful and affordable book about Doctor Who; read about it here.
Tutorial 21: how to measure the length of a centrum
March 11, 2013
For a paper that I and Matt are preparing, we needed to measure the centrum length of a bunch of turkey cervicals. That turns out to be harder than you’d think, because of the curious negative curvature of the articular surfaces.
Above is a C7 from a turkey: anterior view on the left; dorsal, left lateral and ventral views in the middle row; and posterior on the right. As you can see from the anterior, dorsal and ventral views, the anterior articular surface[1] is convex dorsoventrally but concave transversely; and as you can see from the lateral view, the posterior face is concave dorsoventrally and convex transversely.
This means you can’t just put calipers around the vertebra. If you approach the vertebra from the top or bottom, then the upper or lower lip of the posterior articular surface will protrude past the centre of the saddle, and give you too long a length. If you approach from the side, the same will happen with the left and right lips of the anterior articular surface.
What are we trying to measure anyway?
But this raises the question of what it is we’re trying to measure. I said “we needed to measure the centrum length of a bunch of turkey cervicals”, but what exactly is centrum length? Why shouldn’t the upper and lower lips of the posterior articular surface count towards it?
What does centrum length mean?
The problem doesn’t only arise with bird cervicals. The same issue arises in measuring more sensible and elegant vertebrae, such as our old friend HMN SII:C8, or MB.R.2181:C8 as we must now learn to call it.
Although the back of the vertebra is nice and simple here — it’s obvious what line we’re measuring to at the back — we have three choices of where the “front” of the vertebra is, and a case can be made for any of them as being “the length of the vertebra”.
The longest measurement (here marked “T” for “total length”) goes to the front of the prezygapophyseal rami. The next one (“C” for “centrum length”) goes to the anteriormost point of the condyle. The distinction is important: as noted recently, the longest vertebra in the world belongs to Sauroposeidon if we use total length, but to Supersaurus if we use centrum length.
But in life, most of the condyle would be buried in the cotyle of the preceding vertebra. So should it count towards the length of the vertebra? If you consider a string of articulated vertebrae, the buried condyles don’t contribute to the overall length of the neck. So Matt and I call the length from the posterior margin of the condyle to the posterior margin of the cotyle the functional length (marked “F” above), which I believe is a new term.
Another way to think of the functional length is the distance from a given point on a vertebra (in this case the posterior margin of the cotyle) to the same point on the adjacent vertebra:
For our current project, Matt and I are interested in how the lengths of individual vertebrae contribute to total neck length, so for our purposes, functional length is definitely what we want.
By the way, Janensch is the only author I know of to have even recognised the importance of functional length. The measurement tables on pages 39 and 44 have columns for “Gesamtlänge des Wirbels ab Vorderende per Präzygapophyse”, “Gesamtlänge der Wirbel-Körpers in 1/2 Höhe” and “Länge der Wirbel-körpers ohne Condylus in 1/2 Höhe” — that is, “Total length of the vertebra from the anterior end of the prezygapophysis”, “Total length of the centrum measured at mid-height” and “Length of the centrum minus condyle at mid-height”. This is typical of his careful and methodical approach. Kudos!
Hey! I thought this was about turkeys
And so it is. Here is the functional length measurement for a turkey cervical:
It’s the shortest anteroposterior distance between the two articular surfaces.
Measuring functional length
Matt and I chatted about this at some length, and I am ashamed to say that we thought through all sorts of complicated solution involving subtracting measurements from known scaffold length and suchlike.
It took us a stupidly long to to arrive at the very obvious solution, which is just to modify the calipers to have a “tooth” that can protrude into the concavity of the anterior articulation between its left and right lips. Easily done with a flat-ended screw and a blob of wood glue:
With the measurements of all the vertebrae in my series, I can now fairly confidently expect that the sum of the individual lengths will come out at about the length of the complete neck.
You know, unless intervertebral cartilage turns out to be important or something.
References
- Janensch, Werner. 1950. Die Wirbelsaule von Brachiosaurus brancai. Palaeontographica (Suppl. 7) 3:27-93.
Footnotes
1. Matt and I are so used to opisthocoelous sauropod presacrals that when we’re talking about vertebrae — any vertebrae — we tend to say “condyle” and “cotyle” for the anterior and posterior articular surfaces, no matter what their morphology. When talking about crocodile cervicals or titanosaur caudals, we’re even likely to say ridiculous things like “the condyle is concave and the cotyle is convex”. Nonsense, of course: condyle means “A rounded prominence at the end of a bone, most often for articulation with another bone.” What we should say is “the condyle is at the back and the cotyle is in front”.
Update, January 21, 2013: YES, it was! Scroll down for links to the entire saga.
Because it’s doing a hell of an impression of one, if not. It’s got the huge cervical rib loops (wings), bifurcated neural spine (top fins), and even a condyle on the front of the centrum (cockpit pod). About all it’s missing are the zygapophyses and the cervical ribs themselves.
Some actual Apatosaurus cervicals for comparison, from previous posts:

Apatosaurus ajax NSMT-PV 20375, cervical vertebrae 3, 6 and 7 in anterior and posterior views. Modified from Upchurch et al. (2005: plate 2)

Apatosaurus parvus CM 563/UWGM 15556 cervicals 7, 5, 4 and 3 in anterior and right lateral views, from Gilmore (1936:pl. 31)
And of course Mike’s magisterial work photographing the Apatosaurus ajax holotype YPM 1860 cervical:
More on the Umbaran Starfighter here.
The complete Umbaran Starfighter Saga–at least as told on SV-POW!:
- Was the Umbaran Starfighter from Clone Wars inspired by an Apatosaurus vertebra? (Dec. 13, 2012)
- Heck, yes, the Umbaran Starfighter from Clone Wars was inspired by an Apatosaurus vertebra (Dec. 15, 2012)
- Umbaran Starfighter vs. Apatosaurus cervical, round 3 (Dec. 16, 2012)
- Umbaran Starfighter update (Jan. 4, 2013)
- CONFIRMED: the Umbaran Starfighter is an Apatosaurus cervical (Jan. 21, 2013)
For other Star Wars/paleontology crossovers, please see:
The sauropods of Star Wars: Special Edition
and–mostly as shameless self-promotion since the paleo link is pretty tenuous:
References
- Gilmore, C.W. 1936. Osteology of Apatosaurus with special reference to specimens in the Carnegie Museum. Memoirs of the Carnegie Museum 11:175-300.
- Upchurch, P., Tomida, Y., and Barrett, P.M. 2005. A new specimen of Apatosaurus ajax (Sauropoda: Diplodocidae) from the Morrison Formation (Upper Jurassic) of Wyoming, USA. National Science Museum Monographs No. 26. Tokyo. ISSN 1342-9574.
- Wedel, M.J., and Sanders, R.K. 2002. Osteological correlates of cervical musculature in Aves and Sauropoda (Dinosauria: Saurischia), with comments on the cervical ribs of Apatosaurus. PaleoBios 22(3):1-6.
Mystery vert revisited – SV-POW!bucks now on the line
August 26, 2009
Was this just a half-lame attempt to fulfill our titular mandate whilst plugging my new astronomy blog? Of course it was (and I just did it again!). Doesn’t mean you lot are off the hook for figuring out what it is. So here’s another image with more views. You have a week. Don’t let me down.
Oh, and to sweeten the pot, 351 SV-POW!bucks to the person who first figures it out.
UPDATE: Too late, suckers! In a stunning move, Phil Mannion won the contest basically right out of the gate. The vertebra is indeed a cervical of Paluxysaurus (image below from Rose, 2007). Good job, Phil!
Well, now you’re hosed–the contest is over and you’re not due for another post for nearly a week. What to do, what to do? Assuming that you’re all caught up on your Tet Zoo reading, you might want to check out Save Your Breath For Running Ponies. It’s not just a paleo blog, but it has a lot of paleo in it, including lots of smack talk to whatever critter has been in the news lately. For example, see the recent post, “It’s not all mindless sex with beautiful women, placoderm”. This makes SYBFRP sort of the FU, Penguin of paleo.
OR you could discuss the question I posed in the comments: why does “this anterior cervical of Paluxysaurus look so much like Euhelopus, DGM Serie B, etc. The posterior cervicals look like Sauroposeidon, not exactly the same, but lots of similarities. The juxtaposition blew my mind ten years ago, and it still does. Your thoughts are welcome.” They still are.
Behold the righteous wrath of SV-POW!
March 22, 2009
Isn’t this a beauty?
What is it, you ask? We will never know. A friend of mine pointed me to a forthcoming fossil auction by I. M. Chait, and as I scrolled through all the crappy ornithopod skeletons and suchlike, my eye was caught by this bone, described as a “Diplodocus dorsal bone”, from the Bone Cabin quarry in Wyoming. “The dorsal bone most likely came from close to the back of the head[?!]”.
Whatever it is, it ain’t Diplodocus: the metapophyses are too low, the intraspinal trough is not deep enough, the diapophyses are too high up, they’re laterally rather than ventrolaterally inclined, the hyposphene is way too big and too triangular, the centrum is subquadrangular rather than ovoid, the centropostzygapophyseal laminae are absent … I could go on. If you don’t believe me, here is the complete set of Dipodocus carnegii dorsals, from Hatcher (1901: plate VIII): posterior to anterior running from left to right; anterior, posterior and right lateral views from top to bottom.
Not even close.
So what actually is the for-sale vertebra? Of course there is only so much you can say from a single photograph, but it looks very much as though this is something new, as yet undescribed. Unknown to science, in fact. I say that largely because of the those bizarre dorsolaterally oriented struts which extend from the sides of the neural arch to meet and merge with the diapophyses. I don’t recall ever having seen anything like that. In general proportions, too, this vertebra is distinctly odd.
Unknown to science it is, and unknown to science it will remain — if, as seems likely, some rich idiot buys this as a trophy to sit on his cocktail bar. Hence the righeous fury alluded to in the title: so far as the wider world is concerned, so far as our understanding of Morrison Formation ecological diversity is concerned, so far as our understanding of sauropod disparity is concerned, this vertebra might just as well have stayed in the ground.
Unless.
If anyone reading this blog is a rich benefactor, then just maybe this vert could be rescued: bought by someone who appreciates its scientific significance, and donated to an accredited museum, where it can be properly reposited and scientifically studied. So if any of you out there have $5000 to spare and fancy a decent chance at getting a sauropod named after you, you know what to do.
I’ve hestitated about publishing this post, because of the danger that it will become sufficiently widely known to push the price up. The last thing I want is to make more money for the fossil dealers responsible for taking this thing out of the hands of scientists. But I figured it’s worth the risk. Let’s hope I’m right.
[To be absolutely clear: I. M. Chait did not solicit me to write this, neither do they even know about it, and I am pretty sure they would not be happy about it if they did.]
Reference
- Hatcher, Jonathan Bell. 1901. Diplodocus (Marsh): its osteology, taxonomy and probable habits, with a restoration of the skeleton. Memoirs of the Carnegie Museum, 1: 1-63 and plates I-XIII.
Update (23 March 2009)
We have heard from an SV-POW! reader who is looking into buying this specimen and donating it to a museum. Which would be awesome. (I won’t mention his or her name at this stage until he or she authorises me to do so.) That being so, please no-one else try the same thing — we last thing we want is for two readers to get into a bidding war!
A fused atlas and axis in Apatosaurus
February 19, 2009
Here are the first two cervical vertebrae of the Carnegie Apatosaurus, from Gilmore’s 1936 monograph. As you can see, they are fused together. It is a bit weird that we haven’t covered the morphology of the atlas-axis complex here before. And sadly we’re not going to cover it now. I needed to get an image of these verts to a group working on…something secret…and this turned out to be the fastest way to get them the information in a format that would be easy to find for future reference. Hope you don’t feel used.
UPDATE: Here’s something weird: the both verts have facets for cervical ribs, but the cervical ribs had not fused to the vertebrae, even though they normally do, and despite the fact that the vertebrae had fused to each other, even though they normally don’t.